6N8U | pdb_00006n8u

DRAFT model of Schistosoma japonicum Glutathione S-transferase expression tag

PDB DOI: https://doi.org/10.2210/pdb6N8U/pdb

Classification: TRANSFERASE
Organism(s): Schistosoma japonicum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-30 Released: 2019-01-16
Deposition Author(s): Tempel, W., Dong, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free:
0.256 (Depositor), 0.249 (DCC)
R-Value Work:
0.212 (Depositor)
R-Value Observed:
0.214 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

DRAFT model of Schistosoma japonicum Glutathione S-transferase expression tag

Tempel, W., Dong, C.

To be published.

Macromolecule Content

Total Structure Weight: 56.65 kDa
Atom Count: 3,495
Modeled Residue Count: 433
Deposited Residue Count: 480
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 26 kDa isozyme	A, B	240	Schistosoma japonicum	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for P08515 (Schistosoma japonicum) Explore P08515 Go to UniProtKB: P08515
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P08515
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.256 (Depositor), 0.249 (DCC)
R-Value Work: 0.212 (Depositor)
R-Value Observed: 0.214 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.917	α = 90
b = 102.772	β = 90
c = 48.788	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-01-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-01-16
Type: Initial release
Version 1.1: 2024-11-13
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.