6N7M

1.78 Angstrom Resolution Crystal Structure of Hypothetical Protein CD630_05490 from Clostridioides difficile 630.

PDB DOI: https://doi.org/10.2210/pdb6N7M/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Clostridioides difficile 630
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-11-27 Released: 2018-12-12
Deposition Author(s): Minasov, G., Shuvalova, L., Wawrzak, Z., Kiryukhina, O., Dubrovska, I., Anderson, W.F., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.284
R-Value Work: 0.246
R-Value Observed: 0.248

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

1.78 Angstrom Resolution Crystal Structure of Hypothetical Protein CD630_05490 from Clostridioides difficile 630.

Minasov, G., Shuvalova, L., Wawrzak, Z., Kiryukhina, O., Dubrovska, I., Anderson, W.F., Satchell, K.J.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 50.5 kDa
Atom Count: 2,479
Modelled Residue Count: 248
Deposited Residue Count: 440
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical Protein CD630_05490	A, B, C, D	110	Clostridioides difficile 630	Mutation(s): 0 Gene Names: CD630_05490
UniProt
Find proteins for Q188Z7 (Clostridioides difficile (strain 630)) Explore Q188Z7 Go to UniProtKB: Q188Z7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q188Z7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.284
R-Value Work: 0.246
R-Value Observed: 0.248
Space Group: P 1 2₁ 1
Diffraction Data: https://doi.org/10.18430/m36n7m

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 26.62	α = 90
b = 58.688	β = 94.47
c = 77.329	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-12-12

Deposition Author(s):

Satchell, K.J.F.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2018-12-12
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.