6N7L

Crystal structure of an alcohol dehydrogenase from Elizabethkingia anophelis NUHP1

PDB DOI: https://doi.org/10.2210/pdb6N7L/pdb

Classification: OXIDOREDUCTASE
Organism(s): Elizabethkingia anophelis NUHP1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-27 Released: 2018-12-12
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.191
R-Value Work: 0.149
R-Value Observed: 0.151

wwPDB Validation 3D Report Full Report

Currently 6N7L does not have a validation slider image.

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an alcohol dehydrogenase from Elizabethkingia anophelis NUHP1

Edwards, T.E., Dranow, D.M., Horanyi, P.S., Lorimer, D.D., Seattle Structural Genomics Center for Infectious Disease

To be published.

Macromolecule Content

Total Structure Weight: 468.51 kDa
Atom Count: 33,393
Modelled Residue Count: 4,102
Deposited Residue Count: 4,236
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	353	Elizabethkingia anophelis NUHP1	Mutation(s): 0 Gene Names: BD94_3066
UniProt
Find proteins for A0A077EGR8 (Elizabethkingia anophelis NUHP1) Explore A0A077EGR8 Go to UniProtKB: A0A077EGR8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A077EGR8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download Ideal Coordinates CCD File SDF format, chain CA [auth B] SDF format, chain CB [auth D] SDF format, chain CC [auth F] SDF format, chain CD [auth H] SDF format, chain GE [auth K] SDF format, chain LD [auth I] SDF format, chain N [auth A] SDF format, chain NA [auth C] SDF format, chain OE [auth L] SDF format, chain PB [auth E] SDF format, chain PC [auth G] SDF format, chain VD [auth J] MOL2 format, chain CA [auth B] MOL2 format, chain CB [auth D] MOL2 format, chain CC [auth F] MOL2 format, chain CD [auth H] MOL2 format, chain GE [auth K] MOL2 format, chain LD [auth I] MOL2 format, chain N [auth A] MOL2 format, chain NA [auth C] MOL2 format, chain OE [auth L] MOL2 format, chain PB [auth E] MOL2 format, chain PC [auth G] MOL2 format, chain VD [auth J]	CA [auth B] CB [auth D] CC [auth F] CD [auth H] GE [auth K] CA [auth B], CB [auth D], CC [auth F], CD [auth H], GE [auth K], LD [auth I], N [auth A], NA [auth C], OE [auth L], PB [auth E], PC [auth G], VD [auth J]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain CA [auth B] Focus chain CB [auth D] Focus chain CC [auth F] Focus chain CD [auth H] Focus chain GE [auth K] Focus chain LD [auth I] Focus chain N [auth A] Focus chain NA [auth C] Focus chain OE [auth L] Focus chain PB [auth E] Focus chain PC [auth G] Focus chain VD [auth J] Interactions & Density Focus chain CA [auth B] Focus chain CB [auth D] Focus chain CC [auth F] Focus chain CD [auth H] Focus chain GE [auth K] Focus chain LD [auth I] Focus chain N [auth A] Focus chain NA [auth C] Focus chain OE [auth L] Focus chain PB [auth E] Focus chain PC [auth G] Focus chain VD [auth J]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain AB [auth C] SDF format, chain CE [auth J] SDF format, chain DE [auth J] SDF format, chain HD [auth H] SDF format, chain ID [auth H] SDF format, chain JA [auth B] SDF format, chain KA [auth B] SDF format, chain KE [auth K] SDF format, chain LB [auth D] SDF format, chain LE [auth K] SDF format, chain MB [auth D] SDF format, chain MC [auth F] SDF format, chain NC [auth F] SDF format, chain RD [auth I] SDF format, chain RE [auth L] SDF format, chain SD [auth I] SDF format, chain SE [auth L] SDF format, chain XC [auth G] SDF format, chain Y [auth A] SDF format, chain YB [auth E] SDF format, chain YC [auth G] SDF format, chain Z [auth A] SDF format, chain ZA [auth C] SDF format, chain ZB [auth E] MOL2 format, chain AB [auth C] MOL2 format, chain CE [auth J] MOL2 format, chain DE [auth J] MOL2 format, chain HD [auth H] MOL2 format, chain ID [auth H] MOL2 format, chain JA [auth B] MOL2 format, chain KA [auth B] MOL2 format, chain KE [auth K] MOL2 format, chain LB [auth D] MOL2 format, chain LE [auth K] MOL2 format, chain MB [auth D] MOL2 format, chain MC [auth F] MOL2 format, chain NC [auth F] MOL2 format, chain RD [auth I] MOL2 format, chain RE [auth L] MOL2 format, chain SD [auth I] MOL2 format, chain SE [auth L] MOL2 format, chain XC [auth G] MOL2 format, chain Y [auth A] MOL2 format, chain YB [auth E] MOL2 format, chain YC [auth G] MOL2 format, chain Z [auth A] MOL2 format, chain ZA [auth C] MOL2 format, chain ZB [auth E]	AB [auth C] CE [auth J] DE [auth J] HD [auth H] ID [auth H] AB [auth C], CE [auth J], DE [auth J], HD [auth H], ID [auth H], JA [auth B], KA [auth B], KE [auth K], LB [auth D], LE [auth K], MB [auth D], MC [auth F], NC [auth F], RD [auth I], RE [auth L], SD [auth I], SE [auth L], XC [auth G], Y [auth A], YB [auth E], YC [auth G], Z [auth A], ZA [auth C], ZB [auth E]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AB [auth C] Focus chain CE [auth J] Focus chain DE [auth J] Focus chain HD [auth H] Focus chain ID [auth H] Focus chain JA [auth B] Focus chain KA [auth B] Focus chain KE [auth K] Focus chain LB [auth D] Focus chain LE [auth K] Focus chain MB [auth D] Focus chain MC [auth F] Focus chain NC [auth F] Focus chain RD [auth I] Focus chain RE [auth L] Focus chain SD [auth I] Focus chain SE [auth L] Focus chain XC [auth G] Focus chain Y [auth A] Focus chain YB [auth E] Focus chain YC [auth G] Focus chain Z [auth A] Focus chain ZA [auth C] Focus chain ZB [auth E] Interactions & Density Focus chain AB [auth C] Focus chain CE [auth J] Focus chain DE [auth J] Focus chain HD [auth H] Focus chain ID [auth H] Focus chain JA [auth B] Focus chain KA [auth B] Focus chain KE [auth K] Focus chain LB [auth D] Focus chain LE [auth K] Focus chain MB [auth D] Focus chain MC [auth F] Focus chain NC [auth F] Focus chain RD [auth I] Focus chain RE [auth L] Focus chain SD [auth I] Focus chain SE [auth L] Focus chain XC [auth G] Focus chain Y [auth A] Focus chain YB [auth E] Focus chain YC [auth G] Focus chain Z [auth A] Focus chain ZA [auth C] Focus chain ZB [auth E]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain AD [auth H] SDF format, chain AE [auth J] SDF format, chain BA [auth B] SDF format, chain BC [auth F] SDF format, chain BD [auth H] SDF format, chain BE [auth J] SDF format, chain DA [auth B] SDF format, chain DB [auth D] SDF format, chain DC [auth F] SDF format, chain DD [auth H] SDF format, chain EA [auth B] SDF format, chain EB [auth D] SDF format, chain EC [auth F] SDF format, chain ED [auth H] SDF format, chain FA [auth B] SDF format, chain FB [auth D] SDF format, chain FC [auth F] SDF format, chain FD [auth H] SDF format, chain FE [auth K] SDF format, chain GA [auth B] SDF format, chain GB [auth D] SDF format, chain GC [auth F] SDF format, chain GD [auth H] SDF format, chain HA [auth B] SDF format, chain HB [auth D] SDF format, chain HC [auth F] SDF format, chain HE [auth K] SDF format, chain IA [auth B] SDF format, chain IB [auth D] SDF format, chain IC [auth F] SDF format, chain IE [auth K] SDF format, chain JB [auth D] SDF format, chain JC [auth F] SDF format, chain JE [auth K] SDF format, chain KB [auth D] SDF format, chain KC [auth F] SDF format, chain KD [auth I] SDF format, chain LC [auth F] SDF format, chain M [auth A] SDF format, chain MA [auth C] SDF format, chain MD [auth I] SDF format, chain ND [auth I] SDF format, chain NE [auth L] SDF format, chain O [auth A] SDF format, chain OA [auth C] SDF format, chain OB [auth E] SDF format, chain OD [auth I] SDF format, chain P [auth A] SDF format, chain PA [auth C] SDF format, chain PD [auth I] SDF format, chain PE [auth L] SDF format, chain Q [auth A] SDF format, chain QA [auth C] SDF format, chain QB [auth E] SDF format, chain QC [auth G] SDF format, chain QD [auth I] SDF format, chain QE [auth L] SDF format, chain R [auth A] SDF format, chain RA [auth C] SDF format, chain RB [auth E] SDF format, chain RC [auth G] SDF format, chain S [auth A] SDF format, chain SA [auth C] SDF format, chain SB [auth E] SDF format, chain SC [auth G] SDF format, chain T [auth A] SDF format, chain TA [auth C] SDF format, chain TB [auth E] SDF format, chain TC [auth G] SDF format, chain U [auth A] SDF format, chain UA [auth C] SDF format, chain UB [auth E] SDF format, chain UC [auth G] SDF format, chain UD [auth J] SDF format, chain V [auth A] SDF format, chain VA [auth C] SDF format, chain VB [auth E] SDF format, chain VC [auth G] SDF format, chain W [auth A] SDF format, chain WA [auth C] SDF format, chain WB [auth E] SDF format, chain WC [auth G] SDF format, chain WD [auth J] SDF format, chain X [auth A] SDF format, chain XA [auth C] SDF format, chain XB [auth E] SDF format, chain XD [auth J] SDF format, chain YA [auth C] SDF format, chain YD [auth J] SDF format, chain ZD [auth J] MOL2 format, chain AD [auth H] MOL2 format, chain AE [auth J] MOL2 format, chain BA [auth B] MOL2 format, chain BC [auth F] MOL2 format, chain BD [auth H] MOL2 format, chain BE [auth J] MOL2 format, chain DA [auth B] MOL2 format, chain DB [auth D] MOL2 format, chain DC [auth F] MOL2 format, chain DD [auth H] MOL2 format, chain EA [auth B] MOL2 format, chain EB [auth D] MOL2 format, chain EC [auth F] MOL2 format, chain ED [auth H] MOL2 format, chain FA [auth B] MOL2 format, chain FB [auth D] MOL2 format, chain FC [auth F] MOL2 format, chain FD [auth H] MOL2 format, chain FE [auth K] MOL2 format, chain GA [auth B] MOL2 format, chain GB [auth D] MOL2 format, chain GC [auth F] MOL2 format, chain GD [auth H] MOL2 format, chain HA [auth B] MOL2 format, chain HB [auth D] MOL2 format, chain HC [auth F] MOL2 format, chain HE [auth K] MOL2 format, chain IA [auth B] MOL2 format, chain IB [auth D] MOL2 format, chain IC [auth F] MOL2 format, chain IE [auth K] MOL2 format, chain JB [auth D] MOL2 format, chain JC [auth F] MOL2 format, chain JE [auth K] MOL2 format, chain KB [auth D] MOL2 format, chain KC [auth F] MOL2 format, chain KD [auth I] MOL2 format, chain LC [auth F] MOL2 format, chain M [auth A] MOL2 format, chain MA [auth C] MOL2 format, chain MD [auth I] MOL2 format, chain ND [auth I] MOL2 format, chain NE [auth L] MOL2 format, chain O [auth A] MOL2 format, chain OA [auth C] MOL2 format, chain OB [auth E] MOL2 format, chain OD [auth I] MOL2 format, chain P [auth A] MOL2 format, chain PA [auth C] MOL2 format, chain PD [auth I] MOL2 format, chain PE [auth L] MOL2 format, chain Q [auth A] MOL2 format, chain QA [auth C] MOL2 format, chain QB [auth E] MOL2 format, chain QC [auth G] MOL2 format, chain QD [auth I] MOL2 format, chain QE [auth L] MOL2 format, chain R [auth A] MOL2 format, chain RA [auth C] MOL2 format, chain RB [auth E] MOL2 format, chain RC [auth G] MOL2 format, chain S [auth A] MOL2 format, chain SA [auth C] MOL2 format, chain SB [auth E] MOL2 format, chain SC [auth G] MOL2 format, chain T [auth A] MOL2 format, chain TA [auth C] MOL2 format, chain TB [auth E] MOL2 format, chain TC [auth G] MOL2 format, chain U [auth A] MOL2 format, chain UA [auth C] MOL2 format, chain UB [auth E] MOL2 format, chain UC [auth G] MOL2 format, chain UD [auth J] MOL2 format, chain V [auth A] MOL2 format, chain VA [auth C] MOL2 format, chain VB [auth E] MOL2 format, chain VC [auth G] MOL2 format, chain W [auth A] MOL2 format, chain WA [auth C] MOL2 format, chain WB [auth E] MOL2 format, chain WC [auth G] MOL2 format, chain WD [auth J] MOL2 format, chain X [auth A] MOL2 format, chain XA [auth C] MOL2 format, chain XB [auth E] MOL2 format, chain XD [auth J] MOL2 format, chain YA [auth C] MOL2 format, chain YD [auth J] MOL2 format, chain ZD [auth J]	AD [auth H] AE [auth J] BA [auth B] BC [auth F] BD [auth H] AD [auth H], AE [auth J], BA [auth B], BC [auth F], BD [auth H], BE [auth J], DA [auth B], DB [auth D], DC [auth F], DD [auth H], EA [auth B], EB [auth D], EC [auth F], ED [auth H], FA [auth B], FB [auth D], FC [auth F], FD [auth H], FE [auth K], GA [auth B], GB [auth D], GC [auth F], GD [auth H], HA [auth B], HB [auth D], HC [auth F], HE [auth K], IA [auth B], IB [auth D], IC [auth F], IE [auth K], JB [auth D], JC [auth F], JE [auth K], KB [auth D], KC [auth F], KD [auth I], LC [auth F], M [auth A], MA [auth C], MD [auth I], ND [auth I], NE [auth L], O [auth A], OA [auth C], OB [auth E], OD [auth I], P [auth A], PA [auth C], PD [auth I], PE [auth L], Q [auth A], QA [auth C], QB [auth E], QC [auth G], QD [auth I], QE [auth L], R [auth A], RA [auth C], RB [auth E], RC [auth G], S [auth A], SA [auth C], SB [auth E], SC [auth G], T [auth A], TA [auth C], TB [auth E], TC [auth G], U [auth A], UA [auth C], UB [auth E], UC [auth G], UD [auth J], V [auth A], VA [auth C], VB [auth E], VC [auth G], W [auth A], WA [auth C], WB [auth E], WC [auth G], WD [auth J], X [auth A], XA [auth C], XB [auth E], XD [auth J], YA [auth C], YD [auth J], ZD [auth J]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AD [auth H] Focus chain AE [auth J] Focus chain BA [auth B] Focus chain BC [auth F] Focus chain BD [auth H] Focus chain BE [auth J] Focus chain DA [auth B] Focus chain DB [auth D] Focus chain DC [auth F] Focus chain DD [auth H] Focus chain EA [auth B] Focus chain EB [auth D] Focus chain EC [auth F] Focus chain ED [auth H] Focus chain FA [auth B] Focus chain FB [auth D] Focus chain FC [auth F] Focus chain FD [auth H] Focus chain FE [auth K] Focus chain GA [auth B] Focus chain GB [auth D] Focus chain GC [auth F] Focus chain GD [auth H] Focus chain HA [auth B] Focus chain HB [auth D] Focus chain HC [auth F] Focus chain HE [auth K] Focus chain IA [auth B] Focus chain IB [auth D] Focus chain IC [auth F] Focus chain IE [auth K] Focus chain JB [auth D] Focus chain JC [auth F] Focus chain JE [auth K] Focus chain KB [auth D] Focus chain KC [auth F] Focus chain KD [auth I] Focus chain LC [auth F] Focus chain M [auth A] Focus chain MA [auth C] Focus chain MD [auth I] Focus chain ND [auth I] Focus chain NE [auth L] Focus chain O [auth A] Focus chain OA [auth C] Focus chain OB [auth E] Focus chain OD [auth I] Focus chain P [auth A] Focus chain PA [auth C] Focus chain PD [auth I] Focus chain PE [auth L] Focus chain Q [auth A] Focus chain QA [auth C] Focus chain QB [auth E] Focus chain QC [auth G] Focus chain QD [auth I] Focus chain QE [auth L] Focus chain R [auth A] Focus chain RA [auth C] Focus chain RB [auth E] Focus chain RC [auth G] Focus chain S [auth A] Focus chain SA [auth C] Focus chain SB [auth E] Focus chain SC [auth G] Focus chain T [auth A] Focus chain TA [auth C] Focus chain TB [auth E] Focus chain TC [auth G] Focus chain U [auth A] Focus chain UA [auth C] Focus chain UB [auth E] Focus chain UC [auth G] Focus chain UD [auth J] Focus chain V [auth A] Focus chain VA [auth C] Focus chain VB [auth E] Focus chain VC [auth G] Focus chain W [auth A] Focus chain WA [auth C] Focus chain WB [auth E] Focus chain WC [auth G] Focus chain WD [auth J] Focus chain X [auth A] Focus chain XA [auth C] Focus chain XB [auth E] Focus chain XD [auth J] Focus chain YA [auth C] Focus chain YD [auth J] Focus chain ZD [auth J] Interactions & Density Focus chain AD [auth H] Focus chain AE [auth J] Focus chain BA [auth B] Focus chain BC [auth F] Focus chain BD [auth H] Focus chain BE [auth J] Focus chain DA [auth B] Focus chain DB [auth D] Focus chain DC [auth F] Focus chain DD [auth H] Focus chain EA [auth B] Focus chain EB [auth D] Focus chain EC [auth F] Focus chain ED [auth H] Focus chain FA [auth B] Focus chain FB [auth D] Focus chain FC [auth F] Focus chain FD [auth H] Focus chain FE [auth K] Focus chain GA [auth B] Focus chain GB [auth D] Focus chain GC [auth F] Focus chain GD [auth H] Focus chain HA [auth B] Focus chain HB [auth D] Focus chain HC [auth F] Focus chain HE [auth K] Focus chain IA [auth B] Focus chain IB [auth D] Focus chain IC [auth F] Focus chain IE [auth K] Focus chain JB [auth D] Focus chain JC [auth F] Focus chain JE [auth K] Focus chain KB [auth D] Focus chain KC [auth F] Focus chain KD [auth I] Focus chain LC [auth F] Focus chain M [auth A] Focus chain MA [auth C] Focus chain MD [auth I] Focus chain ND [auth I] Focus chain NE [auth L] Focus chain O [auth A] Focus chain OA [auth C] Focus chain OB [auth E] Focus chain OD [auth I] Focus chain P [auth A] Focus chain PA [auth C] Focus chain PD [auth I] Focus chain PE [auth L] Focus chain Q [auth A] Focus chain QA [auth C] Focus chain QB [auth E] Focus chain QC [auth G] Focus chain QD [auth I] Focus chain QE [auth L] Focus chain R [auth A] Focus chain RA [auth C] Focus chain RB [auth E] Focus chain RC [auth G] Focus chain S [auth A] Focus chain SA [auth C] Focus chain SB [auth E] Focus chain SC [auth G] Focus chain T [auth A] Focus chain TA [auth C] Focus chain TB [auth E] Focus chain TC [auth G] Focus chain U [auth A] Focus chain UA [auth C] Focus chain UB [auth E] Focus chain UC [auth G] Focus chain UD [auth J] Focus chain V [auth A] Focus chain VA [auth C] Focus chain VB [auth E] Focus chain VC [auth G] Focus chain W [auth A] Focus chain WA [auth C] Focus chain WB [auth E] Focus chain WC [auth G] Focus chain WD [auth J] Focus chain X [auth A] Focus chain XA [auth C] Focus chain XB [auth E] Focus chain XD [auth J] Focus chain YA [auth C] Focus chain YD [auth J] Focus chain ZD [auth J]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain AC [auth E] SDF format, chain BB [auth C] SDF format, chain EE [auth J] SDF format, chain JD [auth H] SDF format, chain LA [auth B] SDF format, chain ME [auth K] SDF format, chain NB [auth D] SDF format, chain OC [auth F] SDF format, chain TD [auth I] SDF format, chain TE [auth L] SDF format, chain ZC [auth G] MOL2 format, chain AA [auth A] MOL2 format, chain AC [auth E] MOL2 format, chain BB [auth C] MOL2 format, chain EE [auth J] MOL2 format, chain JD [auth H] MOL2 format, chain LA [auth B] MOL2 format, chain ME [auth K] MOL2 format, chain NB [auth D] MOL2 format, chain OC [auth F] MOL2 format, chain TD [auth I] MOL2 format, chain TE [auth L] MOL2 format, chain ZC [auth G]	AA [auth A] AC [auth E] BB [auth C] EE [auth J] JD [auth H] AA [auth A], AC [auth E], BB [auth C], EE [auth J], JD [auth H], LA [auth B], ME [auth K], NB [auth D], OC [auth F], TD [auth I], TE [auth L], ZC [auth G]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth A] Focus chain AC [auth E] Focus chain BB [auth C] Focus chain EE [auth J] Focus chain JD [auth H] Focus chain LA [auth B] Focus chain ME [auth K] Focus chain NB [auth D] Focus chain OC [auth F] Focus chain TD [auth I] Focus chain TE [auth L] Focus chain ZC [auth G] Interactions & Density Focus chain AA [auth A] Focus chain AC [auth E] Focus chain BB [auth C] Focus chain EE [auth J] Focus chain JD [auth H] Focus chain LA [auth B] Focus chain ME [auth K] Focus chain NB [auth D] Focus chain OC [auth F] Focus chain TD [auth I] Focus chain TE [auth L] Focus chain ZC [auth G]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.191
R-Value Work: 0.149
R-Value Observed: 0.151
Space Group: P 1 2₁ 1
Diffraction Data: https://doi.org/10.18430/m36n7l

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.15	α = 90
b = 168.29	β = 97.97
c = 199.73	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Currently 6N7L does not have a validation slider image.

Entry History

Deposition Data

Released Date: 2018-12-12

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2018-12-12
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description