6N6D

Vibrio cholerae Oligoribonuclease bound to pAG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.534 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Vibrio cholerae Oligoribonuclease bound to pAG

Lormand, J.D.Sondermann, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Oligoribonuclease
A
181Vibrio choleraeMutation(s): 0 
Gene Names: orn
EC: 3.1.-.-
Find proteins for A0A0H6V4D7 (Vibrio cholerae)
Go to UniProtKB:  A0A0H6V4D7
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*AP*G)-3')D2synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
D
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.534 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.145 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 89.734α = 90.00
b = 89.734β = 90.00
c = 59.485γ = 120.00
Software Package:
Software NamePurpose
PHENIXphasing
XDSdata reduction
PHENIXrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM123609

Revision History 

  • Version 1.0: 2019-06-12
    Type: Initial release