6N4D

The crystal structure of neuramindase from A/canine/IL/11613/2015 (H3N2) influenza virus.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Assessment of Molecular, Antigenic, and Pathological Features of Canine Influenza A(H3N2) Viruses That Emerged in the United States.

Pulit-Penaloza, J.A.Simpson, N.Yang, H.Creager, H.M.Jones, J.Carney, P.Belser, J.A.Yang, G.Chang, J.Zeng, H.Thor, S.Jang, Y.Killian, M.L.Jenkins-Moore, M.Janas-Martindale, A.Dubovi, E.Wentworth, D.E.Stevens, J.Tumpey, T.M.Davis, C.T.Maines, T.R.

(2017) J. Infect. Dis. 216: S499-S507


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neuraminidase
A, B, C, D
397Influenza A virusMutation(s): 0 
Gene Names: NA
EC: 3.2.1.18
Find proteins for A0A0H3YBU9 (Influenza A virus)
Go to UniProtKB:  A0A0H3YBU9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

Download SDF File 
Download CCD File 
A, B, C, D
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B, C, D
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.210 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 110.451α = 90.00
b = 110.562β = 90.00
c = 126.620γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-11-19 
  • Released Date: 2019-01-30 
  • Deposition Author(s): Yang, H., Stevens, J.

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release