6N40 | pdb_00006n40

Crystal structure of MmpL3 from Mycobacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb6N40/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Mycolicibacterium smegmatis MC2 155
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMDmpstruc

Deposited: 2018-11-16 Released: 2019-02-06
Deposition Author(s): Su, C.-C.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free:
0.315 (Depositor), 0.320 (DCC)
R-Value Work:
0.266 (Depositor), 0.280 (DCC)
R-Value Observed:
0.268 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of MmpL3 from Mycobacterium smegmatis

Su, C.-C., Yu, E.W.

To be published.

Macromolecule Content

Total Structure Weight: 85.44 kDa
Atom Count: 5,535
Modeled Residue Count: 726
Deposited Residue Count: 779
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Membrane protein, MmpL family protein	A	779	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0 Gene Names: MSMEG_0250 Membrane Entity: Yes
UniProt
Find proteins for A0QP27 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QP27 Go to UniProtKB: A0QP27
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0QP27
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free: 0.315 (Depositor), 0.320 (DCC)
R-Value Work: 0.266 (Depositor), 0.280 (DCC)
R-Value Observed: 0.268 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.239	α = 90
b = 130.917	β = 90
c = 155.633	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
DENZO	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-02-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2019-02-06
Type: Initial release
Version 1.1: 2020-01-01
Changes: Author supporting evidence
Version 1.2: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.