6N40 | pdb_00006n40

Crystal structure of MmpL3 from Mycobacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb6N40/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Mycolicibacterium smegmatis MC2 155
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTM MemProtMD mpstruc

Deposited: 2018-11-16 Released: 2019-02-06
Deposition Author(s): Su, C.-C.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free:
0.315 (Depositor), 0.320 (DCC)
R-Value Work:
0.266 (Depositor), 0.275 (DCC)
R-Value Observed:
0.268 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6N40

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of MmpL3 from Mycobacterium smegmatis

Su, C.-C., Yu, E.W.

To be published.

Macromolecule Content

Total Structure Weight: 85.44 kDa
Atom Count: 5,535
Modeled Residue Count: 726
Deposited Residue Count: 779
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Membrane protein, MmpL family protein	A	779	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0 Gene Names: MSMEG_0250 Membrane Entity: Yes
UniProt
Find proteins for A0QP27 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QP27 Go to UniProtKB: A0QP27
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0QP27
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.31 Å
R-Value Free: 0.315 (Depositor), 0.320 (DCC)
R-Value Work: 0.266 (Depositor), 0.275 (DCC)
R-Value Observed: 0.268 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.239	α = 90
b = 130.917	β = 90
c = 155.633	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
DENZO	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-02-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2019-02-06
Type: Initial release
Version 1.1: 2020-01-01
Changes: Author supporting evidence
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.