6N3P

Crosslinked AcpP=FabZ complex from E. coli Type II FAS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural and dynamical rationale for fatty acid unsaturation inEscherichia coli.

Dodge, G.J.Patel, A.Jaremko, K.L.McCammon, J.A.Smith, J.L.Burkart, M.D.

(2019) Proc. Natl. Acad. Sci. U.S.A. 116: 6775-6783


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
A, B, C, D, E, F
154Escherichia coli O45:K1 (strain S88 / ExPEC)Mutation(s): 0 
Gene Names: fabZ
EC: 4.2.1.59
Find proteins for B7MBG1 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Go to UniProtKB:  B7MBG1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Acyl carrier protein
G, H, I, J, K, L
80Escherichia coli O45:K1 (strain S88 / ExPEC)Mutation(s): 0 
Gene Names: acpP
Find proteins for B7MJ81 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Go to UniProtKB:  B7MJ81
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
XLN
Query on XLN

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(3-{[(1Z)-pent-1-en-1-yl]sulfonyl}propyl)-beta-alaninamide
C17 H33 N2 O8 P S
FSMMECVJUFTNBW-FTXNUJCXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 65.136α = 90.00
b = 136.185β = 90.00
c = 152.272γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesDK042303

Revision History 

  • Version 1.0: 2019-03-13
    Type: Initial release
  • Version 1.1: 2019-03-27
    Type: Data collection, Database references
  • Version 1.2: 2019-04-10
    Type: Data collection, Database references