6N3P

Crosslinked AcpP=FabZ complex from E. coli Type II FAS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A structural and dynamical rationale for fatty acid unsaturation in E. coli

Dodge, G.J.Patel, A.Jaremko, K.L.McCammon, J.A.Smith, J.L.Burkart, M.D.

(2019) Proc.Natl.Acad.Sci.Usa --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
A, B, C, D, E, F
154Escherichia coli O45:K1 (strain S88 / ExPEC)Mutation(s): 0 
Gene Names: fabZ
EC: 4.2.1.59
Find proteins for B7MBG1 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Go to UniProtKB:  B7MBG1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Acyl carrier protein
G, H, I, J, K, L
80Escherichia coli O45:K1 (strain S88 / ExPEC)Mutation(s): 0 
Gene Names: acpP
Find proteins for B7MJ81 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Go to UniProtKB:  B7MJ81
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
XLN
Query on XLN

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(3-{[(1Z)-pent-1-en-1-yl]sulfonyl}propyl)-beta-alaninamide
C17 H33 N2 O8 P S
FSMMECVJUFTNBW-FTXNUJCXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 65.136α = 90.00
b = 136.185β = 90.00
c = 152.272γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesDK042303

Revision History 

  • Version 1.0: 2019-03-13
    Type: Initial release