Download MendeleyCrystal structure of hemagglutinin from influenza virus A/Netherlands/209/1980 (H3N2)
Dai, Y.N., Fremont, D.H.To be published.
6N08
Crystal structure of hemagglutinin from influenza virus A/Netherlands/209/1980 (H3N2)
- PDB DOI: 10.2210/pdb6N08/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/Netherlands/209/1980(H3N2))
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2018-11-06 Released: 2019-05-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.252
- R-Value Work: 0.224
- R-Value Observed: 0.225
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemagglutinin | A, B, C | 497 | Influenza A virus (A/Netherlands/209/1980(H3N2)) | Mutation(s): 0 Gene Names: HA |  |
UniProt | |||||
Find proteins for H9XIV6 (Influenza A virus) Explore H9XIV6 Go to UniProtKB: H9XIV6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H9XIV6 | ||||
Protein Feature ViewExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D, F, G, H, J, K, M D, F, G, H, J, K, M | 2 |  | N-Glycosylation | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, I, L, N | 3 |  | N-Glycosylation | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | O [auth A], P [auth A], Q [auth A], R [auth B], S [auth C], | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.252
- R-Value Work: 0.224
- R-Value Observed: 0.225
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 201.99 | α = 90 |
| b = 188.77 | β = 109.82 |
| c = 108.76 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2018-11-06
- Released Date: 2019-05-15 Deposition Author(s): Dai, Y.N., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2019-05-15
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
