6MYL

The Prp8 intein-cisplatin complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.06 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.243 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cisplatin inhibits Prp8 intein splicing and protects mice from challenge of Cryptococcus neoformans

Li, Z.Fu, B.Green, C.M.Lang, Y.Owen, T.S.Zhang, J.Li, X.Callahan, B.P.Chaturvedi, S.Belfort, M.Li, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pre-mRNA-processing-splicing factor 8
A, B, C
214Cryptococcus gattii serotype B (strain R265)Mutation(s): 0 
Find proteins for A0A095EAP2 (Cryptococcus gattii serotype B (strain R265))
Go to UniProtKB:  A0A095EAP2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PT
Query on PT

Download SDF File 
Download CCD File 
A, B, C
PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.06 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.243 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 74.853α = 90.00
b = 74.853β = 90.00
c = 191.886γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXphasing
PHENIXrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-11-01 
  • Released Date: 2019-11-06 
  • Deposition Author(s): Li, Z., Li, H.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM39422
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM44844
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI140726-01A1

Revision History 

  • Version 1.0: 2019-11-06
    Type: Initial release