6MWN

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.838 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites

Koirala, D.Shao, Y.Koldobskaya, Y.Fuller, J.R.Watkins, A.M.Shelke, S.A.Pilipenko, E.V.Das, R.Rice, P.A.Piccirilli, J.A.

(2019) Nat Commun --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Fab HAVx Heavy Chain
C, H
258N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Fab HAVx Light Chain
D, L
238N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 1
MoleculeChainsLengthOrganism
HAV dV RNA (92-MER)A,B92Hepatovirus A
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
GTP
Query on GTP
A, B
NON-POLYMERC10 H16 N5 O14 P3G
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.838 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.186 
  • Space Group: P 21 2 21
Unit Cell:
Length (Å)Angle (°)
a = 74.149α = 90.00
b = 100.582β = 90.00
c = 236.594γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXphasing
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01AI081987
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01GM102489

Revision History 

  • Version 1.0: 2019-08-14
    Type: Initial release