6MU9

Beta-lactamase penicillinase from Bacillus megaterium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.111 
  • R-Value Work: 0.101 
  • R-Value Observed: 0.102 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Beta-lactamase penicillinase from Bacillus megaterium

Osipiuk, J.Tesar, C.Endres, M.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamaseA276Bacillus megaterium DSM 319Mutation(s): 0 
Gene Names: penPBMD_3363
EC: 3.5.2.6
Find proteins for D5DH82 (Bacillus megaterium (strain DSM 319))
Explore D5DH82 
Go to UniProtKB:  D5DH82
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.111 
  • R-Value Work: 0.101 
  • R-Value Observed: 0.102 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/m36mu9 Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 35.307α = 97.73
b = 42.094β = 105.52
c = 48.542γ = 113.34
Software Package:
Software NamePurpose
HKL-3000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201200026C
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700060C

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Author supporting evidence