6MTC

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of translationally inactive mammalian ribosomes.

Brown, A.Baird, M.R.Yip, M.C.Murray, J.Shao, S.

(2018) Elife 7: --

  • DOI: 10.7554/eLife.40486
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The cellular levels and activities of ribosomes directly regulate gene expression during numerous physiological processes. The mechanisms that globally repress translation are incompletely understood. Here, we use electron cryomicroscopy to analyze i ...

    The cellular levels and activities of ribosomes directly regulate gene expression during numerous physiological processes. The mechanisms that globally repress translation are incompletely understood. Here, we use electron cryomicroscopy to analyze inactive ribosomes isolated from mammalian reticulocytes, the penultimate stage of red blood cell differentiation. We identify two types of ribosomes that are translationally repressed by protein interactions. The first comprises ribosomes sequestered with elongation factor 2 (eEF2) by SERPINE mRNA binding protein 1 (SERBP1) occupying the ribosomal mRNA entrance channel. The second type are translationally repressed by a novel ribosome-binding protein, interferon-related developmental regulator 2 (IFRD2), which spans the P and E sites and inserts a C-terminal helix into the mRNA exit channel to preclude translation. IFRD2 binds ribosomes with a tRNA occupying a noncanonical binding site, the 'Z site', on the ribosome. These structures provide functional insights into how ribosomal interactions may suppress translation to regulate gene expression.


    Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, United States.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L8
A
248Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL8
Find proteins for G1TT27 (Oryctolagus cuniculus)
Go to Gene View: RPL8
Go to UniProtKB:  G1TT27
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L3
B
394Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL3
Find proteins for G1TL06 (Oryctolagus cuniculus)
Go to Gene View: RPL3
Go to UniProtKB:  G1TL06
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L4
C
362Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL4
Find proteins for G1SVW5 (Oryctolagus cuniculus)
Go to Gene View: RPL4
Go to UniProtKB:  G1SVW5
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L5
D
293Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL5
Find proteins for G1SYJ6 (Oryctolagus cuniculus)
Go to Gene View: RPL5
Go to UniProtKB:  G1SYJ6
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L6
E
291Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL6
Find proteins for G1SKF7 (Oryctolagus cuniculus)
Go to Gene View: RPL6
Go to UniProtKB:  G1SKF7
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7
F
225Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL7
Find proteins for G1SV32 (Oryctolagus cuniculus)
Go to Gene View: RPL7
Go to UniProtKB:  G1SV32
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7a
G
319N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L9
H
190Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TX33 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TX33
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10
I
214Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL10
Find proteins for B7NZQ2 (Oryctolagus cuniculus)
Go to Gene View: RPL10
Go to UniProtKB:  B7NZQ2
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L11
J
170Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL11
Find proteins for G1TUB8 (Oryctolagus cuniculus)
Go to Gene View: RPL11
Go to UniProtKB:  G1TUB8
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13
L
210N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L14
M
138Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL14
Find proteins for U3KNW6 (Oryctolagus cuniculus)
Go to Gene View: RPL14
Go to UniProtKB:  U3KNW6
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
60S Ribosomal protein L15
N
203Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL15 (LOC100358370)
Find proteins for G1T0C1 (Oryctolagus cuniculus)
Go to Gene View: RPL15
Go to UniProtKB:  G1T0C1
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13a
O
199N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L17
P
153Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1SCJ6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SCJ6
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18
Q
187N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L19
R
180N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18a
S
176N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L21
T
159Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108175794 (LOC108178019)
Find proteins for G1SHQ2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SHQ2
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L22
U
99N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23
V
131Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100351949
Find proteins for G1T6D1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1T6D1
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L24
W
157Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL24
Find proteins for G1SE28 (Oryctolagus cuniculus)
Go to Gene View: RPL24
Go to UniProtKB:  G1SE28
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23a
X
118N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L26
Y
134Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL26
Find proteins for G1SQH0 (Oryctolagus cuniculus)
Go to Gene View: RPL26
Go to UniProtKB:  G1SQH0
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27
Z
135Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100356974 (RPL27)
Find proteins for G1TXF6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TXF6
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27a
a
147Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL27A
Find proteins for G1SNY0 (Oryctolagus cuniculus)
Go to Gene View: RPL27A
Go to UniProtKB:  G1SNY0
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
b
245N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L30
c
98Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100343129
Find proteins for G1TDL2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TDL2
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L31
d
107Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL31
Find proteins for G1SHG0 (Oryctolagus cuniculus)
Go to Gene View: RPL31
Go to UniProtKB:  G1SHG0
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L32
e
128Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100352536 (LOC100345217, LOC100353583, LOC100359042)
Find proteins for G1U437 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U437
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35a
f
109Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35A
Find proteins for G1SF08 (Oryctolagus cuniculus)
Go to Gene View: RPL35A
Go to UniProtKB:  G1SF08
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L34
g
114N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35
h
122Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35
Find proteins for G1SIT5 (Oryctolagus cuniculus)
Go to Gene View: RPL35
Go to UniProtKB:  G1SIT5
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36
i
102Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348796
Find proteins for G1TTQ5 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TTQ5
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37
j
86Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL37
Find proteins for U3KPD5 (Oryctolagus cuniculus)
Go to Gene View: RPL37
Go to UniProtKB:  U3KPD5
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L38
k
69N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L39
l
50Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100343258
Find proteins for G1TTN1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TTN1
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L40
m
52N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L41
n
25N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36a
o
103Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100353469
Find proteins for G1T040 (Oryctolagus cuniculus)
Go to UniProtKB:  G1T040
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37a
p
91Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100351807
Find proteins for G1SY53 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SY53
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L28
r
124Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100358162
Find proteins for G1U7L1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U7L1
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10a
u
206Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL10A
Find proteins for G1SKZ8 (Oryctolagus cuniculus)
Go to Gene View: RPL10A
Go to UniProtKB:  G1SKZ8
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
Interferon-related developmental regulator 2
v
441Oryctolagus cuniculusMutation(s): 0 
Gene Names: IFRD2
Find proteins for G1SHD9 (Oryctolagus cuniculus)
Go to Gene View: IFRD2
Go to UniProtKB:  G1SHD9
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein SA
AA
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3a
BB
213Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS3A (LOC100342838, LOC100348981)
Find proteins for G1SS70 (Oryctolagus cuniculus)
Go to Gene View: RPS3A
Go to UniProtKB:  G1SS70
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S2
CC
221N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3
DD
228N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4, X isoform
EE
262N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S5
FF
204Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS5
Find proteins for G1TFM5 (Oryctolagus cuniculus)
Go to Gene View: RPS5
Go to UniProtKB:  G1TFM5
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6
GG
237Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108178879 (RPS6)
Find proteins for G1TM55 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TM55
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7
HH
194Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS7
Find proteins for G1SVB0 (Oryctolagus cuniculus)
Go to Gene View: RPS7
Go to UniProtKB:  G1SVB0
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8
II
206N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S9
JJ
185Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS9
Find proteins for B7NZS8 (Oryctolagus cuniculus)
Go to Gene View: RPS9
Go to UniProtKB:  B7NZS8
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S10
KK
96Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348511
Find proteins for G1TPV3 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPV3
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S11
LL
158Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS11
Find proteins for G1TRM4 (Oryctolagus cuniculus)
Go to Gene View: RPS11
Go to UniProtKB:  G1TRM4
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
MM
117Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS12
Find proteins for G1SFR8 (Oryctolagus cuniculus)
Go to Gene View: RPS12
Go to UniProtKB:  G1SFR8
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S13
NN
149Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS13
Find proteins for G1SP51 (Oryctolagus cuniculus)
Go to Gene View: RPS13
Go to UniProtKB:  G1SP51
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S14
OO
136N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15
PP
120Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC103349305
Find proteins for G1U0Q2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U0Q2
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S16
QQ
142N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S17
RR
132Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS17
Find proteins for G1TU13 (Oryctolagus cuniculus)
Go to Gene View: RPS17
Go to UniProtKB:  G1TU13
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S18
SS
144Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100356144
Find proteins for G1TPG3 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPG3
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S19
TT
141N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S20
UU
100N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S21
VV
83N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15a
WW
129Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS15A
Find proteins for G1TG89 (Oryctolagus cuniculus)
Go to Gene View: RPS15A
Go to UniProtKB:  G1TG89
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S23
XX
141N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24
YY
124N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S25
ZZ
75Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS25
Find proteins for G1TDB3 (Oryctolagus cuniculus)
Go to Gene View: RPS25
Go to UniProtKB:  G1TDB3
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S26
aa
101N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27
bb
83N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S28
cc
62Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TIB4 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TIB4
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S29
dd
55Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS29
Find proteins for G1U7M4 (Oryctolagus cuniculus)
Go to Gene View: RPS29
Go to UniProtKB:  G1U7M4
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30
ee
55Oryctolagus cuniculusMutation(s): 0 
Gene Names: FAU
Find proteins for G1T8A2 (Oryctolagus cuniculus)
Go to Gene View: FAU
Go to UniProtKB:  G1T8A2
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27a
ff
68Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348379
Find proteins for G1SK22 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SK22
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
Receptor of activated protein C kinase 1
gg
313Oryctolagus cuniculusMutation(s): 0 
Gene Names: RACK1
Find proteins for G1SJB4 (Oryctolagus cuniculus)
Go to Gene View: RACK1
Go to UniProtKB:  G1SJB4
Entity ID: 1
MoleculeChainsLengthOrganism
Z-site tRNA475Oryctolagus cuniculus
Entity ID: 2
MoleculeChainsLengthOrganism
28S rRNA53597Oryctolagus cuniculus
Entity ID: 3
MoleculeChainsLengthOrganism
5S rRNA7120Oryctolagus cuniculus
Entity ID: 4
MoleculeChainsLengthOrganism
5.8S rRNA8151Oryctolagus cuniculus
Entity ID: 49
MoleculeChainsLengthOrganism
18S rRNA91698Oryctolagus cuniculus
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
aa, dd, ff, g, j, m, o, p
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
5, 7, 8, 9, A, B, j, LL, P, TT, V
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  32 Unique
IDChainsTypeFormula2D DiagramParent
A2M
Query on A2M
5, 9
RNA LINKINGC11 H16 N5 O7 PA
PSU
Query on PSU
5, 9
RNA LINKINGC9 H13 N2 O9 PU
5MC
Query on 5MC
5, 9
RNA LINKINGC10 H16 N3 O8 PC
B9B
Query on B9B
5
RNA linkingC13 H20 N5 O8 PG
6MZ
Query on 6MZ
5, 9
RNA LINKINGC11 H16 N5 O7 PA
OMU
Query on OMU
5, 8, 9
RNA LINKINGC10 H15 N2 O9 PU
M7A
Query on M7A
5, 9
RNA linkingC11 H18 N5 O7 PA
MHG
Query on MHG
5
RNA linkingC17 H30 N5 O8 PG
MLZ
Query on MLZ
C, m
L-PEPTIDE LINKINGC7 H16 N2 O2LYS
B8N
Query on B8N
9
RNA linkingC14 H22 N3 O11 P

--

B8Q
Query on B8Q
5, 9
RNA linkingC10 H18 N3 O8 PC
BGH
Query on BGH
5
RNA LINKINGC13 H20 N5 O9 PG
1MA
Query on 1MA
5
RNA LINKINGC11 H16 N5 O7 PA
OMC
Query on OMC
5, 9
RNA LINKINGC10 H16 N3 O8 PC
MA6
Query on MA6
9
RNA LINKINGC12 H18 N5 O7 PA
P7G
Query on P7G
5
RNA linkingC13 H22 N5 O8 PG
B8K
Query on B8K
5
RNA linkingC12 H18 N5 O9 PG
B8W
Query on B8W
5
RNA linkingC11 H16 N5 O8 PG
E6G
Query on E6G
5
RNA linkingC12 H18 N5 O8 PG
2MG
Query on 2MG
5
RNA LINKINGC11 H16 N5 O8 PG
I4U
Query on I4U
5
RNA linkingC12 H19 N2 O9 PU
UR3
Query on UR3
5, 9
RNA LINKINGC10 H15 N2 O9 PU
E7G
Query on E7G
5
RNA linkingC12 H20 N5 O8 PG
E3C
Query on E3C
9
RNA linkingC11 H20 N3 O8 PC
OMG
Query on OMG
5, 9
RNA LINKINGC11 H16 N5 O8 PG
7MG
Query on 7MG
5
RNA LINKINGC11 H18 N5 O8 PG
5MU
Query on 5MU
5, 9
RNA LINKINGC10 H15 N2 O9 PU
B8T
Query on B8T
5
RNA linkingC10 H16 N3 O8 PC
P4U
Query on P4U
5
RNA linkingC12 H19 N2 O9 PU
B8H
Query on B8H
5
RNA linkingC10 H15 N2 O9 PU
4AC
Query on 4AC
9
RNA LINKINGC11 H16 N3 O9 P

--

B9H
Query on B9H
5
RNA linkingC13 H24 N3 O8 PC
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release
  • Version 1.1: 2018-11-28
    Type: Data collection, Database references, Structure summary