6MSO

Crystal structure of mitochondrial fumarate hydratase from Leishmania major in a complex with inhibitor thiomalate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.053 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.159 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structures of Fumarate Hydratases from Leishmania major in a Complex with Inhibitor 2-Thiomalate.

Feliciano, P.R.Drennan, C.L.Nonato, M.C.

(2019) ACS Chem. Biol. 14: 266-275


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
fumarate hydratase
A, B, C, D
585Leishmania majorMutation(s): 0 
EC: 4.2.1.2
Find proteins for Q4QAU9 (Leishmania major)
Go to UniProtKB:  Q4QAU9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

Download SDF File 
Download CCD File 
A, B, C, D
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
JYD
Query on JYD

Download SDF File 
Download CCD File 
A, B, C, D
(2S)-2-sulfanylbutanedioic acid
thiomalate
C4 H6 O4 S
NJRXVEJTAYWCQJ-REOHCLBHSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A, B, C, D
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.053 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.159 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 78.741α = 90.00
b = 138.443β = 90.00
c = 138.073γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research FoundationBrazil2014/22246-4
Sao Paulo Research FoundationBrazil2013/14988-8
Sao Paulo Research FoundationBrazil2008/08262-6
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR35 GM126982
Howard Hughes Medical InstituteUnited States--

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release
  • Version 1.1: 2019-02-27
    Type: Data collection, Database references