6MS4

Crystal structure of the DENR-MCT-1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation.

Lomakin, I.B.Dmitriev, S.E.Steitz, T.A.

(2019) Proc. Natl. Acad. Sci. U.S.A. 116: 528-533


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Malignant T-cell-amplified sequence 1
A
181Homo sapiensMutation(s): 0 
Gene Names: MCTS1 (MCT1)
Find proteins for Q9ULC4 (Homo sapiens)
Go to Gene View: MCTS1
Go to UniProtKB:  Q9ULC4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Density-regulated protein
B
46Homo sapiensMutation(s): 1 
Gene Names: DENR (DRP1)
Find proteins for O43583 (Homo sapiens)
Go to Gene View: DENR
Go to UniProtKB:  O43583
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

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Download CCD File 
A, B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.001 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.231 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 67.810α = 90.00
b = 67.810β = 90.00
c = 124.750γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical InstituteUnited States--
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM022778

Revision History 

  • Version 1.0: 2019-01-02
    Type: Initial release
  • Version 1.1: 2019-01-09
    Type: Data collection, Database references
  • Version 1.2: 2019-01-23
    Type: Data collection, Database references