Degradation of complex arabinoxylans by human colonic Bacteroidetes
Pereira, G.V., DAlessandro-Gabazza, C., Farris, J., Wefers, D., Mackie, R., Koropatkin, N.M., Gabazza, E.C., Cann, I.(2021) Nat Commun 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2021) Nat Commun 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Isoamylase N-terminal domain protein | A, B | 382 | Bacteroides intestinalis DSM 17393 | Mutation(s): 0  Gene Names: BACINT_01033 | ![]() |
UniProt | |||||
Find proteins for B3C969 (Bacteroides intestinalis DSM 17393) Explore B3C969  Go to UniProtKB:  B3C969 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B3C969 | ||||
Protein Feature ViewExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth A], D [auth A], E [auth A], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 95.206 | α = 90 |
b = 95.206 | β = 90 |
c = 202.609 | γ = 120 |
Software Name | Purpose |
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d*TREK | data reduction |
xia2 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
AutoSol | phasing |