6MO9

N-terminal bromodomain of human BRD2 in complex with N-cyclopentyl-7-(3,5-dimethylisoxazol-4-yl)quinoline-5-sulfonamide inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.801 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure-guided discovery of a novel, potent, and orally bioavailable 3,5-dimethylisoxazole aryl-benzimidazole BET bromodomain inhibitor.

Sperandio, D.Aktoudianakis, V.Babaoglu, K.Chen, X.Elbel, K.Chin, G.Corkey, B.Du, J.Jiang, B.Kobayashi, T.Mackman, R.Martinez, R.Yang, H.Zablocki, J.Kusam, S.Jordan, K.Webb, H.Bates, J.G.Lad, L.Mish, M.Niedziela-Majka, A.Metobo, S.Sapre, A.Hung, M.Jin, D.Fung, W.Kan, E.Eisenberg, G.Larson, N.Newby, Z.E.R.Lansdon, E.Tay, C.Neve, R.M.Shevick, S.L.Breckenridge, D.G.

(2019) Bioorg. Med. Chem. 27: 457-469


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 2
A, B, C
126Homo sapiensMutation(s): 0 
Gene Names: BRD2 (KIAA9001, RING3)
Find proteins for P25440 (Homo sapiens)
Go to Gene View: BRD2
Go to UniProtKB:  P25440
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
JVY
Query on JVY

Download SDF File 
Download CCD File 
A, B
N-cyclopentyl-7-(3,5-dimethyl-1,2-oxazol-4-yl)quinoline-5-sulfonamide
C19 H21 N3 O3 S
XPVKQQFUIYGRLM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.801 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.194 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 116.003α = 90.00
b = 55.629β = 95.04
c = 68.340γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
PHENIXphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release
  • Version 1.1: 2019-01-30
    Type: Data collection, Database references