6MLK

Structure of Thioesterase from DEBS with a thioesterase-specific antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery and Characterization of a Thioesterase-Specific Monoclonal Antibody That Recognizes the 6-Deoxyerythronolide B Synthase.

Li, X.Sevillano, N.La Greca, F.Hsu, J.Mathews, I.I.Matsui, T.Craik, C.S.Khosla, C.

(2018) Biochemistry 57: 6201-6208


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
6-deoxyerythronolide-B synthase EryA3, modules 5 and 6
A
300Saccharopolyspora erythraeaMutation(s): 0 
Gene Names: eryA
EC: 2.3.1.94
Find proteins for Q03133 (Saccharopolyspora erythraea)
Go to UniProtKB:  Q03133
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Light chain of Fab 3A6
L
235N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of Fab 3A6
H
251N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
H
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.175 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 172.580α = 90.00
b = 172.580β = 90.00
c = 159.050γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesGM087934
National Institutes of Health/National Human Genome Research InstituteUnited StatesP41CA196276
National Institutes of Health/National Human Genome Research InstituteUnited StatesGM104659
Department of Energy (United States)United StatesDE-AC02-76SF00515
Department of Energy (United States)United StatesP41GM103393

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection, Database references