6MK9

X-ray crystal structure of darunavir-resistant-P51 HIV-1 protease in complex with GRL-121


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

X-ray crystal structure of darunavir-resistant-P51 HIV-1 protease in complex with GRL-121

Yedidi, R.S.Hayashi, H.Das, D.Mitsuya, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protease
A, B
99Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: pol
Find proteins for A0A4P8EW36 (Human immunodeficiency virus 1)
Go to UniProtKB:  A0A4P8EW36
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
7O7
Query on 7O7

Download SDF File 
Download CCD File 
A
(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl {(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate
C33 H42 N4 O7 S2
VXTSDGOABSRKIR-BLFKHSGCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.166 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 62.799α = 90.00
b = 62.799β = 90.00
c = 82.806γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data scaling
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History 

  • Version 1.0: 2019-10-02
    Type: Initial release
  • Version 1.1: 2019-12-04
    Type: Author supporting evidence