6MJ0

Crystal structure of the complete turnip yellow mosaic virus 3'UTR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.

Hartwick, E.W.Costantino, D.A.MacFadden, A.Nix, J.C.Tian, S.Das, R.Kieft, J.S.

(2018) Nat Commun 9: 5074-5074


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
RNA (101-MER)A,B104Turnip yellow mosaic virus
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.227 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 103.032α = 90.00
b = 129.126β = 90.00
c = 172.005γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PHENIXphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesR35GM118070
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01GM097333
National Institutes of Health/National Human Genome Research InstituteUnited StatesP30CA046934
National Institutes of Health/National Human Genome Research InstituteUnited StatesS10OD012033
Department of Energy (United States)United StatesDE-AC02-05CH11231

Revision History 

  • Version 1.0: 2019-01-09
    Type: Initial release