6MEN

Crystal structure of a Tylonycteris bat coronavirus HKU4 macrodomain in complex with adenosine diphosphate glucose (ADP-glucose)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Characterization of a Novel Macrodomain in the Tylonycteris pachypus Bat Coronavirus HKU4

Hammond, R.G.Schormann, N.McPherson, R.L.Leung, A.K.L.Deivanayagam, C.Johnson, M.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Replicase polyprotein 1ab
A, B
174Bat coronavirus HKU4Mutation(s): 0 
Gene Names: rep
Find proteins for P0C6W3 (Bat coronavirus HKU4)
Go to UniProtKB:  P0C6W3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADQ
Query on ADQ

Download SDF File 
Download CCD File 
A, B
ADENOSINE-5'-DIPHOSPHATE-GLUCOSE
ADENOSINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER
C16 H25 N5 O15 P2
WFPZSXYXPSUOPY-ROYWQJLOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.173 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 33.548α = 73.04
b = 41.691β = 88.37
c = 60.001γ = 88.05
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesR35GM119456

Revision History 

  • Version 1.0: 2019-09-11
    Type: Initial release
  • Version 1.1: 2019-12-18
    Type: Author supporting evidence