Macromolecule Content

Total Structure Weight: 18.45 kDa
Atom Count: 1,522
Modelled Residue Count: 159
Deposited Residue Count: 166
Unique protein chains: 1

6MAW

F9 Pilus Adhesin FmlH Lectin Domain from E. coli UTI89 in Complex with Galactoside N-[(2S,3R,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[S-methyl-6-(trifluoromethyl)-[1,1'-biphenyl]-3'-yl]oxy}oxan-3-yl]acetamide

PDB DOI: 10.2210/pdb6MAW/pdb

Classification: sugar binding protein/inhibitor
Organism(s): Escherichia coli UTI89
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2018-08-28 Released: 2019-09-04
Deposition Author(s): Klein, R.D., Hultgren, S.J.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.182
R-Value Work: 0.161
R-Value Observed: 0.162

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

F9 Pilus Adhesin FmlH Lectin Domain from E. coli UTI89 in Complex with Galactoside N-[(2S,3R,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[S-methyl-6-(trifluoromethyl)-[1,1'-biphenyl]-3'-yl]oxy}oxan-3-yl]acetamide

Klein, R.D., Pinkner, J.S., Hultgren, S.J., Janetka, J.W.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fimbrial adhesin FmlD	A	166	Escherichia coli UTI89	Mutation(s): 0 Gene Names: b1502, fmlD, ydeQ, AC789_1c16310, ACN002_1542, B1K96_25685, BK292_08390, BN17_21261, C7B02_22960, CR538_13120... b1502, fmlD, ydeQ, AC789_1c16310, ACN002_1542, B1K96_25685, BK292_08390, BN17_21261, C7B02_22960, CR538_13120, CWS33_06125, CXB56_15680, HW43_11455, RX35_00290
UniProt
Find proteins for P77588 (Escherichia coli (strain K12)) Explore P77588 Go to UniProtKB: P77588
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P77588
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
JC7 (Subject of Investigation/LOI) Query on JC7 Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	N-[2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}-6'-(trifluoromethyl)[1,1'-biphenyl]-3-yl]methanesulfonamide C₂₂ H₂₅ F₃ N₂ O₈ S RPOJFLNPFLSKOB-QNDFHXLGSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.182
R-Value Work: 0.161
R-Value Observed: 0.162
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.445	α = 90
b = 110.212	β = 90
c = 90.195	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History & Funding Information

Deposition Data

Released Date: 2019-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01AI048689

Revision History (Full details and data files)

Version 1.0: 2019-09-04
Type: Initial release
Version 1.1: 2019-12-18
Changes: Author supporting evidence

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.