6M9B

Wild-type streptavidin in complex with biotin solved by native SAD with data collected at 6 keV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.548 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Making routine native SAD a reality: lessons from beamline X06DA at the Swiss Light Source

Basu, S.Finke, A.D.Wang, M.Olieric, V.

(2019) Acta Crystallogr.,Sect.D D75: 262-271


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Streptavidin
A, B, C, D
127Streptomyces avidiniiMutation(s): 0 
Find proteins for P22629 (Streptomyces avidinii)
Go to UniProtKB:  P22629
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BTN
Query on BTN

Download SDF File 
Download CCD File 
A, B, C, D
BIOTIN
C10 H16 N2 O3 S
YBJHBAHKTGYVGT-ZKWXMUAHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.548 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.154 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 50.978α = 90.00
b = 98.322β = 112.64
c = 52.795γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
SHARPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-23 
  • Released Date: 2019-04-17 
  • Deposition Author(s): Finke, A.D.

Revision History 

  • Version 1.0: 2019-04-17
    Type: Initial release