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Download EndnoteConformational transitions drive ERAP1 catalytic cycle and explain the effect of disease-correlated polymorphism.
Maben, Z., Stern, L.J.To be published.
6M8P
Human ERAP1 bound to phosphinic pseudotripeptide inhibitor DG013
- DOI: 10.2210/pdb6M8P/pdb
- Classification: HYDROLASE/INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2018-08-22 Released: 2019-12-18
- Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.31 Å
- R-Value Free: 0.295
- R-Value Work: 0.285
- R-Value Observed: 0.286
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endoplasmic reticulum aminopeptidase 1 | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V | 899 | Homo sapiens | Mutation(s): 0 Gene Names: ERAP1, APPILS, ARTS1, KIAA0525, UNQ584/PRO1154 EC: 3.4.11 |  |
Find proteins for Q9NZ08 (Homo sapiens) Explore Q9NZ08 Go to UniProtKB: Q9NZ08 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation |
| beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, AA, BA, CA, DA, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z | 3 | | N-Glycosylation |
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P52 Query on P52 | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V | Nalpha-[(2S)-2-{[[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]methyl}-4-methylpentanoyl]-L-tryptophanamide C27 H37 N4 O4 P QKFOTLXPIIESQI-IEZKXTBUSA-N |  | Ligand Interaction | |
| NAG Query on NAG | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| ZN Query on ZN | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.31 Å
- R-Value Free: 0.295
- R-Value Work: 0.285
- R-Value Observed: 0.286
- Space Group: P 2 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 125.79 | α = 90 |
| b = 548.684 | β = 90 |
| c = 589.056 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| STARANISO | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-08-22
- Released Date: 2019-12-18 Deposition Author(s): Maben, Z., Stern, L.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) | United States | R01AI038996 |
