6M7B | pdb_00006m7b

Structure of REV7-R124A complexed with SHLD3(37-73)

• PDB DOI: https://doi.org/10.2210/pdb6M7B/pdb

• Classification: REPLICATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-03-18 Released: 2021-01-27 
• Deposition Author(s): Ma, Y.Z., Li, Y., Wu, B.X., Huang, H.D.
• Funding Organization(s): Ministry of Science and Technology (MoST, China), National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free: 
  0.224 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.175 (Depositor), 0.190 (DCC) 

Starting Model: experimental

Literature

Structure of REV7-R124A complexed with SHLD3(37-73)

Ma, Y.Z., Li, Y., Wu, B.X., Huang, H.D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 57.24 kDa 
• Atom Count: 4,219 
• Modeled Residue Count: 473 
• Deposited Residue Count: 496 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitotic spindle assembly checkpoint protein MAD2B	A, B	211	Homo sapiens	Mutation(s): 1  Gene Names: MAD2L2, MAD2B, REV7
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UI95 (Homo sapiens) Explore Q9UI95  Go to UniProtKB:  Q9UI95
PHAROS:  Q9UI95 GTEx:  ENSG00000116670

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Shieldin complex subunit 3	C, D	37	Homo sapiens	Mutation(s): 0  Gene Names: SHLD3, FLJ26957, RINN1
UniProt & NIH Common Fund Data Resources
Find proteins for Q6ZNX1 (Homo sapiens) Explore Q6ZNX1  Go to UniProtKB:  Q6ZNX1
PHAROS:  Q6ZNX1 GTEx:  ENSG00000253251

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free:  0.224 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.175 (Depositor), 0.190 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.125	α = 90
b = 62.286	β = 90
c = 131.686	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-01-27 
Deposition Author(s): Ma, Y.Z., Li, Y., Wu, B.X., Huang, H.D.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2018YFC1004500
National Natural Science Foundation of China (NSFC)	China	the Thousand Young Talents Program

Revision History  

• Version 1.0: 2021-01-27
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description