6M3U | pdb_00006m3u

Crystal structure of the mouse endonuclease EndoG(H138A/C100A), space group C2

• PDB DOI: https://doi.org/10.2210/pdb6M3U/pdb

• Classification: APOPTOSIS
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2020-03-04 Released: 2021-10-20 
• Deposition Author(s): Park, K.H., Woo, E.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free: 
  0.237 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.201 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the mouse endonuclease EndoG(H138A/C100A), space group C2

Park, K.H., Woo, E.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: assay for oligomerization

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 109.89 kDa 
• Atom Count: 7,636 
• Modeled Residue Count: 925 
• Deposited Residue Count: 996 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endonuclease G, mitochondrial	A, B, C, D	249	Mus musculus	Mutation(s): 2  Gene Names: Endog EC: 3.1.30
UniProt & NIH Common Fund Data Resources
Find proteins for O08600 (Mus musculus) Explore O08600  Go to UniProtKB:  O08600
IMPC:  MGI:1261433

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free:  0.237 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.201 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 252.407	α = 90
b = 81.34	β = 102.17
c = 54.684	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-10-20 
Deposition Author(s): Park, K.H., Woo, E.J.

Revision History  

• Version 1.0: 2021-10-20
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description