6M37 | pdb_00006m37

The crystal structure of B. subtilis RsbV/RsbW complex in the hexagonal crystal form

PDB DOI: https://doi.org/10.2210/pdb6M37/pdb

Classification: SIGNALING PROTEIN
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-03-02 Released: 2020-07-15
Deposition Author(s): Pathak, D., Kwon, E., Kim, D.Y.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.252 (Depositor), 0.250 (DCC)
R-Value Work:
0.222 (Depositor), 0.220 (DCC)
R-Value Observed:
0.223 (Depositor)

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into the regulation of SigB activity by RsbV and RsbW.

Pathak, D., Jin, K.S., Tandukar, S., Kim, J.H., Kwon, E., Kim, D.Y.

(2020) IUCrJ 7: 737-747

DOI: https://doi.org/10.1107/S2052252520007617

Macromolecule Content

Total Structure Weight: 54.11 kDa
Atom Count: 3,333
Modeled Residue Count: 429
Deposited Residue Count: 488
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine-protein kinase RsbW	A, C	141	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: rsbW, BSU04720 EC: 2.7.11.1
UniProt
Find proteins for P17904 (Bacillus subtilis (strain 168)) Explore P17904 Go to UniProtKB: P17904
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P17904
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti-sigma-B factor antagonist	B, D	103	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: rsbV, BSU04710
UniProt
Find proteins for P17903 (Bacillus subtilis (strain 168)) Explore P17903 Go to UniProtKB: P17903
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P17903
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.252 (Depositor), 0.250 (DCC)
R-Value Work: 0.222 (Depositor), 0.220 (DCC)
R-Value Observed: 0.223 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 158.2	α = 90
b = 158.2	β = 90
c = 96.6	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2017R1D1A1B03034088
National Research Foundation (NRF, Korea)	Korea, Republic Of	2017R1A6A3A11029218

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.