6LWY | pdb_00006lwy

Crystal structure of Laterosporulin3, bacteriocin produced by Brevibacillus sp. strain SKR3

• PDB DOI: https://doi.org/10.2210/pdb6LWY/pdb

• Classification: TOXIN
• Organism(s): Brevibacillus sp. SKR3
• Mutation(s): No 


• Deposited: 2020-02-09 Released: 2021-02-10 
• Deposition Author(s): Thakur, K.G., Solanki, V.
• Funding Organization(s): Council of Scientific & Industrial Research (CSIR)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.233 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.187 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Laterosporulin3, bacteriocin produced by Brevibacillus sp. strain SKR3

Thakur, K.G., Solanki, V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 5.95 kDa 
• Atom Count: 396 
• Modeled Residue Count: 49 
• Deposited Residue Count: 49 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Laterosporulin3	A	49	Brevibacillus sp. SKR3	Mutation(s): 0
UniProt
Find proteins for A0A075R4X6 (Brevibacillus laterosporus LMG 15441) Explore A0A075R4X6  Go to UniProtKB:  A0A075R4X6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BR (Subject of Investigation/LOI)	B [auth A], C [auth A], D [auth A], E [auth A]	BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.233 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.187 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: P 4₃ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.46	α = 90
b = 63.46	β = 90
c = 63.46	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-02-10 
Deposition Author(s): Thakur, K.G., Solanki, V.

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Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	--

Revision History  

• Version 1.0: 2021-02-10
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-11-13
  Changes: Structure summary