6LP4 | pdb_00006lp4

Structural basis and functional analysis epo1-bem3p complex for bud growth

PDB DOI: https://doi.org/10.2210/pdb6LP4/pdb

Classification: CELL ADHESION
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-08 Released: 2021-01-13
Deposition Author(s): Wang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.281 (Depositor), 0.280 (DCC)
R-Value Work:
0.260 (Depositor), 0.260 (DCC)
R-Value Observed:
0.261 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural basis and functional analysis epo1-bem3p complex for bud growth

Wang, J.

To be published.

Macromolecule Content

Total Structure Weight: 14.15 kDa
Atom Count: 980
Modeled Residue Count: 126
Deposited Residue Count: 128
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vesicle-associated membrane protein-associated protein SCS2	A	128	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: SCS2, YER120W
UniProt
Find proteins for P40075 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40075 Go to UniProtKB: P40075
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40075
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.281 (Depositor), 0.280 (DCC)
R-Value Work: 0.260 (Depositor), 0.260 (DCC)
R-Value Observed: 0.261 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.66	α = 90
b = 70.66	β = 90
c = 56.54	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-01-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-01-13
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.