6LO8 | pdb_00006lo8

Cryo-EM structure of the TIM22 complex from yeast

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6LO8

This is version 1.2 of the entry. See complete history. 

Literature

Structure of the mitochondrial TIM22 complex from yeast.

Zhang, Y., Ou, X., Wang, X., Sun, D., Zhou, X., Wu, X., Li, Q., Li, L.

(2021) Cell Res 31: 366-368

  • DOI: https://doi.org/10.1038/s41422-020-00399-0
  • Primary Citation Related Structures: 
    6LO8
    • Organizational Affiliation: 
    • State Key Laboratory of Membrane Biology, Peking University, Beijing, China.

Macromolecule Content 

  • Total Structure Weight: 183.67 kDa 
  • Atom Count: 7,972 
  • Modeled Residue Count: 997 
  • Deposited Residue Count: 1,630 
  • Unique protein chains: 7

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM22206Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q12328 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12328 
Go to UniProtKB:  Q12328
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12328
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM54478Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P47045 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47045 
Go to UniProtKB:  P47045
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47045
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial198Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P33421 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P33421 
Go to UniProtKB:  P33421
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33421
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM18192Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q08749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08749 
Go to UniProtKB:  Q08749
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08749
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM9
E, G, I
87Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for O74700 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore O74700 
Go to UniProtKB:  O74700
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO74700
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM12109Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P32830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32830 
Go to UniProtKB:  P32830
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32830
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM10
H, J
93Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P87108 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P87108 
Go to UniProtKB:  P87108
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP87108
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-30
    Type: Initial release
  • Version 1.1: 2021-03-17
    Changes: Database references
  • Version 1.2: 2024-10-23
    Changes: Data collection, Database references, Structure summary