6LJH | pdb_00006ljh

Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua in complex with NAD+

• PDB DOI: https://doi.org/10.2210/pdb6LJH/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Artemisia annua
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-12-16 Released: 2020-12-23 
• Deposition Author(s): Feng, X., Fan, S., Li, M., Zou, S., Lv, G., Wu, G., Jin, Y., Yang, Z.
• Funding Organization(s): Ministry of Science and Technology (MoST, China), National Natural Science Foundation of China (NSFC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.180 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.153 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Alcohol dehydrogenase 1 from Artemisia annua in complex with NAD+

Yang, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 42.79 kDa 
• Atom Count: 3,379 
• Modeled Residue Count: 377 
• Deposited Residue Count: 386 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase 1	A	386	Artemisia annua	Mutation(s): 0  Gene Names: ADH1, CTI12_AA090660 EC: 1.1.1
UniProt
Find proteins for A0A2U1Q018 (Artemisia annua) Explore A0A2U1Q018  Go to UniProtKB:  A0A2U1Q018

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD (Subject of Investigation/LOI)	B [auth A]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
GOL (Subject of Investigation/LOI)	E [auth A], F [auth A], G [auth A], H [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
ZN (Subject of Investigation/LOI)	C [auth A], D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA (Subject of Investigation/LOI)	I [auth A], J [auth A], K [auth A], L [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.180 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.153 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.446	α = 90
b = 54.153	β = 101.28
c = 90.374	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-12-23 
Deposition Author(s): Feng, X., Fan, S., Li, M., Zou, S., Lv, G., Wu, G., Jin, Y., Yang, Z.

---

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2018YFA0901800
National Natural Science Foundation of China (NSFC)	China	8161101360
National Natural Science Foundation of China (NSFC)	China	81872782

Revision History  

• Version 1.0: 2020-12-23
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description