6LFA | pdb_00006lfa

Structure of the N-terminal domain of Wag31

PDB DOI: https://doi.org/10.2210/pdb6LFA/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-11-30 Released: 2020-07-15
Deposition Author(s): Chaudhuri, B.N., Choukate, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.225 (Depositor), 0.230 (DCC)
R-Value Work:
0.175 (Depositor), 0.170 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural basis of self-assembly in the lipid-binding domain of mycobacterial polar growth factor Wag31

Chaudhuri, B.N., Choukate, K.

(2020) IUCrJ 7: 767-776

DOI: https://doi.org/10.1107/S2052252520006053

Macromolecule Content

Total Structure Weight: 17.49 kDa
Atom Count: 1,137
Modeled Residue Count: 132
Deposited Residue Count: 148
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell wall synthesis protein Wag31	A, B	74	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: wag31, ag84, Rv2145c, MTCY270.23
UniProt
Find proteins for P9WMU1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WMU1 Go to UniProtKB: P9WMU1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P9WMU1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PGE Query on PGE Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	TRIETHYLENE GLYCOL C₆ H₁₄ O₄ ZIBGPFATKBEMQZ-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.225 (Depositor), 0.230 (DCC)
R-Value Work: 0.175 (Depositor), 0.170 (DCC)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.988	α = 90
b = 53.768	β = 100.793
c = 61.24	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOLREP	phasing
Aimless	data scaling
Coot	model building
XDS	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-07-15

Deposition Author(s):

Chaudhuri, B.N.

Revision History (Full details and data files)

Version 1.0: 2020-07-15
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.