6LBW

Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.217 

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Literature

Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex

Aoyama, H.A.Obika, S.O.Nakagawa, O.N.

To be published.

Macromolecules
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*CP*GP*(CBR)P*GP*AP*(LCC)P*TP*CP*GP*CP*G)-3')A, B11synthetic construct
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    AG
    Query on AG

    Download CCD File 
    A
    SILVER ION
    Ag
    FOIXSVOLVBLSDH-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.50 Å
    • R-Value Free: 0.243 
    • R-Value Work: 0.214 
    • R-Value Observed: 0.217 
    • Space Group: F 2 2 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 28.56α = 90
    b = 68.11β = 90
    c = 118.85γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    XDSdata reduction
    XSCALEdata scaling
    PDB_EXTRACTdata extraction
    SHELXDEphasing

    Structure Validation

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    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2020-11-18
      Type: Initial release