6L9F | pdb_00006l9f

Crystal structure of TEAD4 in complex with a novel FAM181A peptide

• PDB DOI: https://doi.org/10.2210/pdb6L9F/pdb

• Classification: PROTEIN BINDING
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-11-09 Released: 2019-12-11 
• Deposition Author(s): Chen, M., Zhou, Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free: 
  0.253 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.196 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of TEAD4 in complex with a novel FAM181A peptide

Chen, M., Zhou, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 57.47 kDa 
• Atom Count: 3,847 
• Modeled Residue Count: 451 
• Deposited Residue Count: 484 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-3	A, C [auth B]	222	Mus musculus	Mutation(s): 0  Gene Names: Tead4, Tcf13r1, Tef3, Tefr1
UniProt
Find proteins for Q62296 (Mus musculus) Explore Q62296  Go to UniProtKB:  Q62296

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein FAM181A	B [auth C], D	20	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N9Y4 (Homo sapiens) Explore Q8N9Y4  Go to UniProtKB:  Q8N9Y4
PHAROS:  Q8N9Y4 GTEx:  ENSG00000140067

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ACT	E [auth A], F [auth A], G [auth C], H [auth B], I [auth B]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
P1L	A, C [auth B]	L-PEPTIDE LINKING	C19 H37 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free:  0.253 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.190 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.196 (Depositor) 

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.009	α = 90
b = 110.009	β = 90
c = 182.711	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-12-11 
Deposition Author(s): Chen, M., Zhou, Z.

Revision History  

• Version 1.0: 2019-12-11
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description