6L8Q

Complex structure of bat CD26 and MERS-RBD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Complex structure of bat CD26 and MERS-RBD

Yuan, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dipeptidyl peptidase 4
A, C, E, G
731Myotis davidiiMutation(s): 0 
Find proteins for L5LQ33 (Myotis davidii)
Go to UniProtKB:  L5LQ33
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Spike glycoprotein
B, D, F, H
246Middle East respiratory syndrome-related coronavirusMutation(s): 0 
Gene Names: S
Find proteins for A0A0A0Q7F3 (Middle East respiratory syndrome-related coronavirus)
Go to UniProtKB:  A0A0A0Q7F3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, C, E, G
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.200 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 114.657α = 90.00
b = 273.674β = 119.68
c = 115.234γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
HKL-2000data reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-11-07 
  • Released Date: 2019-12-04 
  • Deposition Author(s): Yuan, Y.

Funding OrganizationLocationGrant Number
National Science Foundation (China)China--

Revision History 

  • Version 1.0: 2019-12-04
    Type: Initial release