Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
Balasubramanian, M., Kolatkar, P.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription factor SOX-17 | C [auth D], F | 83 | Mus musculus | Mutation(s): 1  Gene Names: Sox17, Sox-17 | |
UniProt | |||||
Find proteins for Q61473 (Mus musculus) Explore Q61473  Go to UniProtKB:  Q61473 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q61473 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*GP*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*G)-3') | A, D [auth C] | 16 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3') | 16 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 (Subject of Investigation/LOI) Query on SO4 | G [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 71.04 | α = 90 |
b = 73.205 | β = 90 |
c = 81.952 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PROTEUM | data reduction |
SADABS | data scaling |
PHENIX | phasing |
PROTEUM | data collection |
Funding Organization | Location | Grant Number |
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Qatar Foundation | Qatar | IGP1 2014-004 |