6L4I | pdb_00006l4i

Monomeric structure of monellin loop1 mutant with QEPKG motif

PDB DOI: https://doi.org/10.2210/pdb6L4I/pdb

Classification: PLANT PROTEIN
Organism(s): Dioscoreophyllum cumminsii
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2019-10-17 Released: 2021-04-21
Deposition Author(s): Manjula, R., Ramaswamy, S., Gosavi, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.247 (Depositor), 0.250 (DCC)
R-Value Work:
0.178 (Depositor), 0.180 (DCC)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Monomer structure of Loop1 mutant Monellin with QEPKG motif

Manjula, R., Ramaswamy, S., Gosavi, S.

To be published.

Macromolecule Content

Total Structure Weight: 21.27 kDa
Atom Count: 1,512
Modeled Residue Count: 175
Deposited Residue Count: 182
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Single chain Monellin	A, B	91	Dioscoreophyllum cumminsii	Mutation(s): 0
UniProt
Find proteins for P02881 (Dioscoreophyllum cumminsii) Explore P02881 Go to UniProtKB: P02881
Find proteins for P02882 (Dioscoreophyllum cumminsii) Explore P02882 Go to UniProtKB: P02882
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P02881P02882
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.247 (Depositor), 0.250 (DCC)
R-Value Work: 0.178 (Depositor), 0.180 (DCC)
R-Value Observed: 0.182 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.049	α = 90
b = 58.322	β = 91.99
c = 45.183	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-04-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-04-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Advisory, Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.