6L3Q | pdb_00006l3q

Crystal structure of Chaetomium thermophilum Utp15 C terminal domain

PDB DOI: https://doi.org/10.2210/pdb6L3Q/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Thermochaetoides thermophila DSM 1495
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-10-14 Released: 2020-04-15
Deposition Author(s): Chen, R.C., Ye, K.Q.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.241 (Depositor), 0.240 (DCC)
R-Value Work:
0.199 (Depositor), 0.200 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Chaetomium thermophilum Utp15 C terminal domain

Chen, R.C., Ye, K.Q.

To be published.

Macromolecule Content

Total Structure Weight: 31.37 kDa
Atom Count: 2,019
Modeled Residue Count: 254
Deposited Residue Count: 280
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
WD_REPEATS_REGION domain-containing protein	A, B	140	Thermochaetoides thermophila DSM 1495	Mutation(s): 0 Gene Names: CTHT_0063870
UniProt
Find proteins for G0SEI5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SEI5 Go to UniProtKB: G0SEI5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G0SEI5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.241 (Depositor), 0.240 (DCC)
R-Value Work: 0.199 (Depositor), 0.200 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.188	α = 90
b = 106.188	β = 90
c = 59.081	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-04-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	91540201

Revision History (Full details and data files)

Version 1.0: 2020-04-15
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.