Crystal Structure of an Arabidopsis Copine providing insights into this protein family
Wang, Q.C., Jiang, M.Q., Isupov, M.N., Sun, L.F., Wu, Y.K.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Macromolecule Content 
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BONZAI 1 | 553 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BON1, CPN1, At5g61900, K22G18.2 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q941L3 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BONZAI 1 | 528 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BON1, CPN1, At5g61900, K22G18.2 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q941L3 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BONZAI 1 | 550 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BON1, CPN1, At5g61900, K22G18.2 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q941L3 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BONZAI 1 | 527 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BON1, CPN1, At5g61900, K22G18.2 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q941L3 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BONZAI 1 | 553 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BON1, CPN1, At5g61900, K22G18.2 | ![]() | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q941L3 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Download:Ideal Coordinates CCD File | DC [auth D], QA [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
| PGE Download:Ideal Coordinates CCD File | FA [auth A], OB [auth C], SA [auth B], UD [auth F], V [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
| PEG Download:Ideal Coordinates CCD File | AB [auth C] BC [auth D] CB [auth C] DB [auth C] EC [auth D] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
| GOL Download:Ideal Coordinates CCD File | AC [auth D] BA [auth A] CA [auth A] CD [auth E] DA [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
| EDO Download:Ideal Coordinates CCD File | AA [auth A] AD [auth E] BB [auth C] BD [auth E] BE [auth G] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
| CA (Subject of Investigation/LOI) Download:Ideal Coordinates CCD File | AE [auth F], QC [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
| CL Download:Ideal Coordinates CCD File | PC [auth D], QB [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 122.284 | α = 90 |
| b = 118.716 | β = 90.2 |
| c = 222.253 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHENIX | phasing |