6KR4

Crystal structure of the liprin-alpha3_SAM123/LAR_D1D2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Basis of Liprin-alpha-promoted LAR-RPTP Clustering for Modulation of Phosphatase Activity

Wei, Z.Xie, X.Luo, L.Liang, M.Zhang, W.Zhang, T.Yu, C.

(2020) Nat Commun --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Receptor-type tyrosine-protein phosphatase F
A, B, C, D
580Homo sapiensMutation(s): 0 
Gene Names: PTPRF (LAR)
EC: 3.1.3.48
Find proteins for P10586 (Homo sapiens)
Go to Gene View: PTPRF
Go to UniProtKB:  P10586
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Liprin-alpha-3
E, F, H, G
325Mus musculusMutation(s): 0 
Gene Names: Ppfia3
Find proteins for P60469 (Mus musculus)
Go to UniProtKB:  P60469
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C, D, E
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
A, B, C
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
P6G
Query on P6G

Download SDF File 
Download CCD File 
D
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
C, D
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.192 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 250.378α = 90.00
b = 147.678β = 103.85
c = 143.972γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31770791
National Natural Science Foundation of ChinaChina31570741

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release