Structure of the SCL3 homodimer bound to the BIRD/IDD transcription factor
Hirano, Y., Shimizu, R., Nishimura, T., Morita, M.T., Hakoshima, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Scarecrow-like protein 3 | A [auth C] | 484 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: SCL3, At1g50420, F11F12.22 | |
UniProt | |||||
Find proteins for Q9LPR8 (Arabidopsis thaliana) Explore Q9LPR8  Go to UniProtKB:  Q9LPR8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9LPR8 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide from Zinc finger protein JACKDAW | 17 | Arabidopsis thaliana | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q700D2 (Arabidopsis thaliana) Explore Q700D2  Go to UniProtKB:  Q700D2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q700D2 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | C | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 112.037 | α = 90 |
b = 112.037 | β = 90 |
c = 70.979 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Science and Technology | Japan | JPMJCR14M5 |
Japan Society for the Promotion of Science | Japan | 17K07448 |