6KK8

XN joint refinement of manganese catalase from Thermus Thermophilus HB27

PDB DOI: 10.2210/pdb6KK8/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermus thermophilus HB27
Expression System: Thermus thermophilus HB27
Mutation(s): No

Deposited: 2019-07-24 Released: 2019-09-04
Deposition Author(s): Yamada, T., Yano, N., Kusaka, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free: 0.133
R-Value Work: 0.122
R-Value Observed: 0.123

Method: NEUTRON DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.191
R-Value Work: 0.152
R-Value Observed: 0.154

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Single-crystal time-of-flight neutron Laue methods: application to manganese catalase from Thermus thermophilus HB27

Yamada, T., Yano, N., Hosoya, T., Kusaka, K.

(2019) J Appl Crystallogr

DOI: 10.1107/S1600576719010239

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pseudocatalase	A, B	302	Thermus thermophilus HB27	Mutation(s): 0 Gene Names: TT_C1872 EC: 1.11.1.6
UniProt
Find proteins for Q72GH6 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72GH6 Go to UniProtKB: Q72GH6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q72GH6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain I [auth A] MOL2 format, chain I [auth A]	I [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain O [auth B] MOL2 format, chain H [auth A] MOL2 format, chain O [auth B]	H [auth A], O [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction
MN3 Query on MN3 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain J [auth B] SDF format, chain K [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B]	C [auth A], D [auth A], J [auth B], K [auth B]	MANGANESE (III) ION Mn MMIPFLVOWGHZQD-UHFFFAOYSA-N		Ligand Interaction
O Query on O Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain L [auth B] SDF format, chain M [auth B] SDF format, chain N [auth B] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B]	E [auth A], F [auth A], G [auth A], L [auth B], M [auth B], E [auth A], F [auth A], G [auth A], L [auth B], M [auth B], N [auth B]	OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N		Ligand Interaction