6KF8 | pdb_00006kf8

OsACBP2 in complex with C18:3-CoA

PDB DOI: https://doi.org/10.2210/pdb6KF8/pdb

Classification: PLANT PROTEIN
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Mutation(s): No

Deposited: 2019-07-06 Released: 2020-10-21
Deposition Author(s): Jin, J., Chye, M.L.
Funding Organization(s): The University Grants Committee, Research Grants Council (RGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free:
0.279 (Depositor), 0.288 (DCC)
R-Value Work:
0.228 (Depositor), 0.233 (DCC)
R-Value Observed:
0.230 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

OsACBP2 in complex with C18:3-CoA

Jin, J., Chye, M.L.

To be published.

Macromolecule Content

Total Structure Weight: 62.43 kDa
Atom Count: 4,256
Modeled Residue Count: 534
Deposited Residue Count: 558
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA-binding domain-containing protein 2	A [auth C] B [auth A] C [auth D] D [auth F] E [auth I] A [auth C], B [auth A], C [auth D], D [auth F], E [auth I], F [auth K]	93	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: ACBP2, Os06g0115300, LOC_Os06g02490, OsJ_19900, OSJNBa0019F11.14, P0541H01.36
UniProt
Find proteins for Q5VRM0 (Oryza sativa subsp. japonica) Explore Q5VRM0 Go to UniProtKB: Q5VRM0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5VRM0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.279 (Depositor), 0.288 (DCC)
R-Value Work: 0.228 (Depositor), 0.233 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.965	α = 90
b = 149.965	β = 90
c = 95.443	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-10-21

Deposition Author(s):

Funding Organization	Location	Grant Number
The University Grants Committee, Research Grants Council (RGC)	Hong Kong	--

Revision History (Full details and data files)

Version 1.0: 2020-10-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.