6KF8 | pdb_00006kf8

OsACBP2 in complex with C18:3-CoA

• PDB DOI: https://doi.org/10.2210/pdb6KF8/pdb

• Classification: PLANT PROTEIN
• Organism(s): Oryza sativa Japonica Group
• Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
• Mutation(s): No 


• Deposited: 2019-07-06 Released: 2020-10-21 
• Deposition Author(s): Jin, J., Chye, M.L.
• Funding Organization(s): The University Grants Committee, Research Grants Council (RGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free: 
  0.279 (Depositor), 0.290 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.230 (Depositor) 

Starting Model: experimental

Literature

OsACBP2 in complex with C18:3-CoA

Jin, J., Chye, M.L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: light scattering

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors.

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 62.43 kDa 
• Atom Count: 4,256 
• Modeled Residue Count: 534 
• Deposited Residue Count: 558 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA-binding domain-containing protein 2	A [auth C], B [auth A], C [auth D], D [auth F], E [auth I], F [auth K]	93	Oryza sativa Japonica Group	Mutation(s): 0  Gene Names: ACBP2, Os06g0115300, LOC_Os06g02490, OsJ_19900, OSJNBa0019F11.14, P0541H01.36
UniProt
Find proteins for Q5VRM0 (Oryza sativa subsp. japonica) Explore Q5VRM0  Go to UniProtKB:  Q5VRM0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free:  0.279 (Depositor), 0.290 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.230 (Depositor) 

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 149.965	α = 90
b = 149.965	β = 90
c = 95.443	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-10-21 
Deposition Author(s): Jin, J., Chye, M.L.

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Funding Organization	Location	Grant Number
The University Grants Committee, Research Grants Council (RGC)	Hong Kong	--

Revision History  

• Version 1.0: 2020-10-21
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description