Download MendeleyStructural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
Yang, C.C., Zhang, X.G.To be published.
6KD3 | pdb_00006kd3
6KD3 | pdb_00006kd3
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
- PDB DOI: https://doi.org/10.2210/pdb6KD3/pdb
- Classification: TRANSFERASE
- Organism(s): Phytophthora capsici LT1534
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-06-30 Released: 2019-12-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.76 Å
- R-Value Free: 0.428 (Depositor), 0.429 (DCC)
- R-Value Work: 0.386 (Depositor), 0.389 (DCC)
- R-Value Observed: 0.388 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | 322 | Phytophthora capsici LT1534 | Mutation(s): 0 EC: 2.4.2.3 |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.76 Å
- R-Value Free: 0.428 (Depositor), 0.429 (DCC)
- R-Value Work: 0.386 (Depositor), 0.389 (DCC)
- R-Value Observed: 0.388 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 105.836 | α = 90 |
| b = 66.386 | β = 96.77 |
| c = 261.061 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2019-12-25 Deposition Author(s): Yang, C.C., Zhang, X.G.
Revision History (Full details and data files)
- Version 1.0: 2019-12-25
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references
