6K9L | pdb_00006k9l

4.27 Angstrom resolution cryo-EM structure of human dimeric ATM kinase

• PDB DOI: https://doi.org/10.2210/pdb6K9L/pdb
• EM Map EMD-9950: EMDB EMDataResource

• Classification: CELL CYCLE
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2019-06-16 Released: 2019-12-25 
• Deposition Author(s): Xiao, J., Liu, M., Qi, Y., Chaban, Y., Gao, C., Tian, Y., Yu, Z., Li, J., Zhang, P., Xu, Y.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.27 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural insights into the activation of ATM kinase.

Xiao, J., Liu, M., Qi, Y., Chaban, Y., Gao, C., Pan, B., Tian, Y., Yu, Z., Li, J., Zhang, P., Xu, Y.

(2019) Cell Res 29: 683-685

• PubMed: 31320732 
• DOI: https://doi.org/10.1038/s41422-019-0205-0
• Primary Citation Related Structures: 
  6K9K, 6K9L

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Organizational Affiliation: 
• Fudan University Shanghai Cancer Center, Institutes of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Key Laboratory of Medical Epigenetics and Metabolism, Shanghai Medical College of Fudan University, Shanghai, 200032, China.
Key Laboratory of Molecular Medicine, Ministry of Education, Department of Systems Biology for Medicine, School of Basic Medical Sciences, Shanghai Medical College of Fudan University, Shanghai, 200032, China.
Electron Bio-Imaging Centre, Diamond Light Sources, Harwell Science and Innovation Campus, Didcot, Oxfordshire, UK.
National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai, 201210, China.
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Fudan University Shanghai Cancer Center, Institutes of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Key Laboratory of Medical Epigenetics and Metabolism, Shanghai Medical College of Fudan University, Shanghai, 200032, China. [e-mail].
Key Laboratory of Molecular Medicine, Ministry of Education, Department of Systems Biology for Medicine, School of Basic Medical Sciences, Shanghai Medical College of Fudan University, Shanghai, 200032, China. [e-mail].
Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200433, China. [e-mail].
CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, 200031, China. [e-mail].

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration, equilibrium centrifugation, microscopy

Macromolecule Content 

• Total Structure Weight: 702.26 kDa 
• Atom Count: 30,601 
• Modeled Residue Count: 5,103 
• Deposited Residue Count: 6,112 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine-protein kinase ATM	A, B	3,056	Homo sapiens	Mutation(s): 0  Gene Names: ATM EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13315 (Homo sapiens) Explore Q13315  Go to UniProtKB:  Q13315
PHAROS:  Q13315 GTEx:  ENSG00000149311

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.27 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-12-25 
Deposition Author(s): Xiao, J., Liu, M., Qi, Y., Chaban, Y., Gao, C., Tian, Y., Yu, Z., Li, J., Zhang, P., Xu, Y.

Revision History  

• Version 1.0: 2019-12-25
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references