6K98 | pdb_00006k98

Substrates promiscuity of xyloglucanases and endoglucanases of glycoside hydrolase 12 family

• PDB DOI: https://doi.org/10.2210/pdb6K98/pdb

• Classification: HYDROLASE
• Organism(s): Aspergillus fischeri
• Expression System: Komagataella phaffii CBS 7435
• Mutation(s): No 


• Deposited: 2019-06-14 Released: 2020-06-17 
• Deposition Author(s): Hong, Y., Tao, T., Pengjun, S., Jiaming, C., Xiaoyu, W., Chen, H., yingguo, B., Bin, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.03 Å
• R-Value Free: 
  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.185 (Depositor) 
• R-Value Observed: 
  0.187 (Depositor) 

Starting Model: experimental

Literature

Substrates promiscuity of xyloglucanases and endoglucanases of glycoside hydrolase 12 family

Hong, Y., Tao, T., Pengjun, S., Jiaming, C., Xiaoyu, W., Chen, H., yingguo, B., Bin, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: homology

Macromolecule Content 

• Total Structure Weight: 24.21 kDa 
• Atom Count: 1,825 
• Modeled Residue Count: 219 
• Deposited Residue Count: 219 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GH12 beta-1, 4-endoglucanase	A	219	Aspergillus fischeri	Mutation(s): 0  Gene Names: Nfeg12A EC: 3.2.1.4
UniProt
Find proteins for A0A1L6CE30 (Aspergillus fischeri) Explore A0A1L6CE30  Go to UniProtKB:  A0A1L6CE30

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.03 Å
• R-Value Free:  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.185 (Depositor) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.708	α = 90
b = 92.708	β = 90
c = 119.928	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-06-17 
Deposition Author(s): Hong, Y., Tao, T., Pengjun, S., Jiaming, C., Xiaoyu, W., Chen, H., yingguo, B., Bin, Y.

Revision History  

• Version 1.0: 2020-06-17
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-16
  Changes: Structure summary