6K83 | pdb_00006k83

Structure of RGLG1 mutant-D207G

PDB DOI: https://doi.org/10.2210/pdb6K83/pdb

Classification: TRANSFERASE
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-06-11 Released: 2020-06-24
Deposition Author(s): Wang, Q., Wu, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å
R-Value Free:
0.268 (Depositor), 0.270 (DCC)
R-Value Work:
0.205 (Depositor), 0.210 (DCC)
R-Value Observed:
0.209 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

RGLG1 mutant-D207G

Wang, Q., Wu, Y.

To be published.

Macromolecule Content

Total Structure Weight: 266.01 kDa
Atom Count: 17,985
Modeled Residue Count: 2,240
Deposited Residue Count: 2,408
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase RGLG1	A [auth B] B [auth A] C D E A [auth B], B [auth A], C, D, E, F, G, H	301	Arabidopsis thaliana	Mutation(s): 1 Gene Names: RGLG1, At3g01650, F4P13.19 EC: 2.3.2.27
UniProt
Find proteins for Q9SS90 (Arabidopsis thaliana) Explore Q9SS90 Go to UniProtKB: Q9SS90
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9SS90
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download Ideal Coordinates CCD File SDF format, chain Z [auth E] SDF format, chain X [auth D] SDF format, chain W [auth D] SDF format, chain V [auth D] SDF format, chain T [auth C] SDF format, chain S [auth C] SDF format, chain R [auth C] SDF format, chain P [auth A] SDF format, chain O [auth A] SDF format, chain NA [auth H] SDF format, chain N [auth A] SDF format, chain MA [auth H] SDF format, chain LA [auth H] SDF format, chain L [auth B] SDF format, chain K [auth B] SDF format, chain JA [auth G] SDF format, chain J [auth B] SDF format, chain IA [auth G] SDF format, chain HA [auth G] SDF format, chain FA [auth F] SDF format, chain EA [auth F] SDF format, chain DA [auth F] SDF format, chain BA [auth E] SDF format, chain AA [auth E] MOL2 format, chain Z [auth E] MOL2 format, chain X [auth D] MOL2 format, chain W [auth D] MOL2 format, chain V [auth D] MOL2 format, chain T [auth C] MOL2 format, chain S [auth C] MOL2 format, chain R [auth C] MOL2 format, chain P [auth A] MOL2 format, chain O [auth A] MOL2 format, chain NA [auth H] MOL2 format, chain N [auth A] MOL2 format, chain MA [auth H] MOL2 format, chain LA [auth H] MOL2 format, chain L [auth B] MOL2 format, chain K [auth B] MOL2 format, chain JA [auth G] MOL2 format, chain J [auth B] MOL2 format, chain IA [auth G] MOL2 format, chain HA [auth G] MOL2 format, chain FA [auth F] MOL2 format, chain EA [auth F] MOL2 format, chain DA [auth F] MOL2 format, chain BA [auth E] MOL2 format, chain AA [auth E] mmCIF format, chain Z [auth E] mmCIF format, chain X [auth D] mmCIF format, chain W [auth D] mmCIF format, chain V [auth D] mmCIF format, chain T [auth C] mmCIF format, chain S [auth C] mmCIF format, chain R [auth C] mmCIF format, chain P [auth A] mmCIF format, chain O [auth A] mmCIF format, chain NA [auth H] mmCIF format, chain N [auth A] mmCIF format, chain MA [auth H] mmCIF format, chain LA [auth H] mmCIF format, chain L [auth B] mmCIF format, chain K [auth B] mmCIF format, chain JA [auth G] mmCIF format, chain J [auth B] mmCIF format, chain IA [auth G] mmCIF format, chain HA [auth G] mmCIF format, chain FA [auth F] mmCIF format, chain EA [auth F] mmCIF format, chain DA [auth F] mmCIF format, chain BA [auth E] mmCIF format, chain AA [auth E]	AA [auth E] BA [auth E] DA [auth F] EA [auth F] FA [auth F] AA [auth E], BA [auth E], DA [auth F], EA [auth F], FA [auth F], HA [auth G], IA [auth G], J [auth B], JA [auth G], K [auth B], L [auth B], LA [auth H], MA [auth H], N [auth A], NA [auth H], O [auth A], P [auth A], R [auth C], S [auth C], T [auth C], V [auth D], W [auth D], X [auth D], Z [auth E]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain AA [auth E] Focus chain BA [auth E] Focus chain DA [auth F] Focus chain EA [auth F] Focus chain FA [auth F] Focus chain HA [auth G] Focus chain IA [auth G] Focus chain J [auth B] Focus chain JA [auth G] Focus chain K [auth B] Focus chain L [auth B] Focus chain LA [auth H] Focus chain MA [auth H] Focus chain N [auth A] Focus chain NA [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain R [auth C] Focus chain S [auth C] Focus chain T [auth C] Focus chain V [auth D] Focus chain W [auth D] Focus chain X [auth D] Focus chain Z [auth E] Interactions & Density Focus chain AA [auth E] Focus chain BA [auth E] Focus chain DA [auth F] Focus chain EA [auth F] Focus chain FA [auth F] Focus chain HA [auth G] Focus chain IA [auth G] Focus chain J [auth B] Focus chain JA [auth G] Focus chain K [auth B] Focus chain L [auth B] Focus chain LA [auth H] Focus chain MA [auth H] Focus chain N [auth A] Focus chain NA [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain R [auth C] Focus chain S [auth C] Focus chain T [auth C] Focus chain V [auth D] Focus chain W [auth D] Focus chain X [auth D] Focus chain Z [auth E]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain Y [auth E] SDF format, chain U [auth D] SDF format, chain Q [auth C] SDF format, chain M [auth A] SDF format, chain KA [auth H] SDF format, chain I [auth B] SDF format, chain GA [auth G] SDF format, chain CA [auth F] MOL2 format, chain Y [auth E] MOL2 format, chain U [auth D] MOL2 format, chain Q [auth C] MOL2 format, chain M [auth A] MOL2 format, chain KA [auth H] MOL2 format, chain I [auth B] MOL2 format, chain GA [auth G] MOL2 format, chain CA [auth F] mmCIF format, chain Y [auth E] mmCIF format, chain U [auth D] mmCIF format, chain Q [auth C] mmCIF format, chain M [auth A] mmCIF format, chain KA [auth H] mmCIF format, chain I [auth B] mmCIF format, chain GA [auth G] mmCIF format, chain CA [auth F]	CA [auth F] GA [auth G] I [auth B] KA [auth H] M [auth A] CA [auth F], GA [auth G], I [auth B], KA [auth H], M [auth A], Q [auth C], U [auth D], Y [auth E]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain CA [auth F] Focus chain GA [auth G] Focus chain I [auth B] Focus chain KA [auth H] Focus chain M [auth A] Focus chain Q [auth C] Focus chain U [auth D] Focus chain Y [auth E] Interactions & Density Focus chain CA [auth F] Focus chain GA [auth G] Focus chain I [auth B] Focus chain KA [auth H] Focus chain M [auth A] Focus chain Q [auth C] Focus chain U [auth D] Focus chain Y [auth E]