6K6R

Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase RDL2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Saccharomyces cerevisiaeRhodanese RDL2 Uses the ArgResidue of the Active-Site Loop for Thiosulfate Decomposition

Wang, Q.D.Li, H.Xia, Y.Xun, L.Li, H.J.

(2021) Antioxidants (Basel) 10


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thiosulfate sulfurtransferase RDL2, mitochondrialA,
B [auth D]
149Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RDL2AIM42FMP31YOR286W
EC: 2.8.1.1
UniProt
Find proteins for Q08742 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08742 
Go to UniProtKB:  Q08742
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08742
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
CSS
Query on CSS
A,
B [auth D]
L-PEPTIDE LINKINGC3 H7 N O2 S2CYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.753α = 90
b = 79.753β = 90
c = 110.382γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina91751207, 31770093

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-06
    Type: Initial release
  • Version 1.1: 2021-10-06
    Changes: Database references, Derived calculations
  • Version 1.2: 2023-11-22
    Changes: Data collection, Refinement description