6K4T

Crystal structure of SMB-1 metallo-beta-lactamase in a complex with TSA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.147 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of SMB-1 metallo-beta-lactamase in a complex with TSA

Wachino, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Metallo-beta-lactamase
A
262Serratia marcescensMutation(s): 0 
Gene Names: SMB-1
Find proteins for G5ELM3 (Serratia marcescens)
Go to UniProtKB:  G5ELM3
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
JKE
Query on JKE

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A
2-sulfanylbenzoic acid
C7 H6 O2 S
NBOMNTLFRHMDEZ-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

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Download CCD File 
A
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.170 
  • R-Value Work: 0.147 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 37.040α = 108.60
b = 41.590β = 102.75
c = 45.550γ = 106.06
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
SCALAdata scaling
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-05-27 
  • Released Date: 2019-08-07 
  • Deposition Author(s): Wachino, J.

Revision History 

  • Version 1.0: 2019-08-07
    Type: Initial release