6JXG

Crystasl Structure of Beta-glucosidase D2-BGL from Chaetomella Raphigera

• PDB DOI: https://doi.org/10.2210/pdb6JXG/pdb

• Classification: HYDROLASE
• Organism(s): Chaetomella raphigera
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 2019-04-23 Released: 2019-11-20 
• Deposition Author(s): Wang, A.H.-J., Lee, C.C., Kao, M.R., Ho, T.H.D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.195 
• R-Value Work: 0.145 
• R-Value Observed: 0.147 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 76.62 kDa 
• Atom Count: 5,856 
• Modelled Residue Count: 713 
• Deposited Residue Count: 722 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-glucosidase	A	722	Chaetomella raphigera	Mutation(s): 0  EC: 3.2.1.21
UniProt
Find proteins for A0A068FT77 (Chaetomella raphigera) Explore A0A068FT77  Go to UniProtKB:  A0A068FT77

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	B [auth A], C [auth A], D [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
MAN	E [auth A]	alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.195 
• R-Value Work: 0.145 
• R-Value Observed: 0.147 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.774	α = 90
b = 77.661	β = 90
c = 123.481	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-11-20 
Deposition Author(s): Wang, A.H.-J., Lee, C.C., Kao, M.R., Ho, T.H.D.

Revision History  

• Version 1.0: 2019-11-20
  Type: Initial release
  
• Version 1.1: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.2: 2023-11-22
  Changes: Data collection, Database references, Refinement description, Structure summary