6JW2

Universal RVD R* accommodates 5hmC via water-mediated interactions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.03 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.238 

wwPDB Validation 3D Report Full Report



Literature

Universal RVD R* accommodates 5hmC via water-mediated interactions

Liu, L.Yi, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TAL effector
A, B, E, H
498Xanthomonas campestris pv. armoraciaeMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
  • Find similar nucleic acids by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3')C, F,I,K17synthetic construct
  • Find similar nucleic acids by: Sequence   |   Structure
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3')D, G,J,L17synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.03 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.238 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.517α = 90
b = 93.776β = 102.66
c = 167.749γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-04-18 
  • Released Date: 2020-04-22 
  • Deposition Author(s): Liu, L., Yi, C.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China91953201
National Natural Science Foundation of China (NSFC)China21825701

Revision History 

  • Version 1.0: 2020-04-22
    Type: Initial release